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topdownproteomics
/
sdk
Software solution for common top-down proteomics tasks
http://www.topdownproteomics.org/
MIT License
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4
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Implemented a chemical proteoform hash, a unique string for a proteof…
#64
b-early
closed
4 years ago
0
Multiple modifications at site
#63
b-early
closed
4 years ago
0
Added indices to modifications in ProteoformGroup.
#62
b-early
closed
4 years ago
0
Fix the empty nuspec file listing
#61
acesnik
closed
5 years ago
1
Isotope handling
#60
rfellers
closed
5 years ago
0
Improve bracket handling cases
#59
acesnik
closed
6 years ago
0
Tough cases to check
#58
acesnik
opened
6 years ago
0
Add parsing and writing for ambiguity descriptors
#57
acesnik
closed
6 years ago
4
Add Isotope Support
#56
rfellers
closed
5 years ago
3
UofW incorporation
#55
rfellers
closed
4 years ago
6
UniProt modification handling
#54
rfellers
closed
6 years ago
0
PSI-MOD handling
#53
rfellers
closed
6 years ago
0
NU code merge
#52
rfellers
closed
6 years ago
1
Add Unimod support
#51
rfellers
closed
6 years ago
0
catch non-amino acid uppercase letters
#50
rmillikin
closed
6 years ago
5
remove some code region annotations
#49
rmillikin
closed
6 years ago
0
added nuspec
#48
acesnik
closed
6 years ago
2
Readme start
#47
rfellers
closed
6 years ago
1
license this thing
#46
rfellers
closed
6 years ago
1
RESID Modification handling
#45
rfellers
closed
6 years ago
0
PTM likelihoods and scores
#44
acesnik
opened
6 years ago
2
Rename hypothesis and add some residue handling
#43
rfellers
closed
6 years ago
0
Proteoform hypothesis
#42
rfellers
closed
6 years ago
0
Chemical formula expansion and performance
#41
acesnik
opened
6 years ago
7
Chemical formula api
#40
rfellers
closed
6 years ago
2
Changed index property name and description
#39
acesnik
closed
6 years ago
0
Writing prefix tags
#38
acesnik
opened
6 years ago
2
ProteoformGroup
#37
acesnik
opened
6 years ago
13
Created basic ProForma writer with some tests
#36
rfellers
closed
6 years ago
0
Trimming white space left of values in parsing?
#35
acesnik
opened
6 years ago
1
Biomarker Search
#34
trishorts
opened
6 years ago
4
Handle 4 best practice proforma sequences
#33
rfellers
closed
6 years ago
1
Rule 7
#32
rfellers
closed
6 years ago
0
Reorg project
#31
rfellers
closed
6 years ago
1
Proteoform lists and line lengths
#30
trishorts
opened
6 years ago
6
Starts work on rule 6, need some feedback
#29
rfellers
closed
6 years ago
4
force strict XML doc standards, add simple documentation where needed
#28
rfellers
closed
6 years ago
0
Store database source for single-value modification descriptors with (Unimod), (UniProt), (PSI-MOD), etc. following name
#27
acesnik
closed
6 years ago
0
Handle incorrect sequence characters
#26
rfellers
closed
6 years ago
0
Update appveyor badge
#25
stefanks
closed
6 years ago
0
Create Chemical Formula API to support ProForma
#24
rfellers
closed
6 years ago
1
Force documentation on library
#23
rfellers
closed
6 years ago
0
Add support for modification names from alternate databases
#22
acesnik
closed
6 years ago
1
Add support for single value descriptors.
#21
acesnik
closed
6 years ago
0
Testing equivalency of proteoform sequences
#20
acesnik
opened
6 years ago
1
Validating ProForma
#19
acesnik
opened
6 years ago
2
Writing ProForma
#18
acesnik
closed
6 years ago
1
Ambiguity of PTM localization
#17
acesnik
opened
6 years ago
19
add simple change to support rule 4
#16
rfellers
closed
6 years ago
0
Improve handling of bad input
#15
rfellers
closed
6 years ago
0
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