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torognes
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vsearch
Versatile open-source tool for microbiome analysis
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Optional low memory mode for --derep_fulllength
#475
DominikBuchner
closed
2 years ago
6
support for Illumina RTA3 simplified quality scores?
#474
frederic-mahe
closed
2 years ago
1
Alignment using vsearch, how to output the sequence of the best hit?
#473
cberthelier
closed
2 years ago
3
derep_fulllength: handling of empty input files and streams
#472
frederic-mahe
closed
2 years ago
2
fix two GCC 10.2 format warnings
#471
frederic-mahe
closed
2 years ago
2
Fatal error: Invalid line 3 in FASTQ file: '+' line must be empty or identical to header
#470
kennyyeo13
closed
2 years ago
8
fastq_mergepairs randomly fails to finish when called in parallel
#469
fjossandon
closed
2 years ago
11
cite Edgar and Flyvbjerg (2015)
#468
frederic-mahe
closed
2 years ago
0
It seemed that vsearch don't have -otutab_stats function in usearch
#467
Achuan-2
opened
2 years ago
1
Multithreading support on fastq_filter command
#466
ZeweiSong
closed
2 years ago
1
Feature request- normalize samples to the same number of reads in otu table
#465
Anto007
opened
2 years ago
1
Allow randseed option to sintax command
#464
torognes
closed
1 year ago
9
Version of the make utility to compile the vsearch software
#463
DenisGoryunov
closed
2 years ago
9
Feature request - UDB support with `uchime_ref`
#462
vmikk
closed
2 years ago
2
Feature request --selfmap filename or --self optional filename or etc
#461
crosenth
opened
2 years ago
0
About converting read2 FASTQ only
#460
zymeth123
closed
2 years ago
1
Disable maxseqlength and minseqlength by default
#459
mirajaonison
closed
2 years ago
2
Compilation error with Autoconf 2.70 on Debian
#458
torognes
closed
3 years ago
1
Hints from Lintian
#457
torognes
closed
3 years ago
1
Potentially incorrect results on ppc64le with usearch_global
#456
torognes
closed
3 years ago
4
Documentation missing
#455
theo-allnutt-bioinformatics
closed
3 years ago
1
Installation - error in sudo make: recipe for target 'fastx.o' failed
#454
OndroV
closed
3 years ago
3
Abundance information not stripped from sequence headers in --uc output when using --xsize
#453
crosenth
closed
3 years ago
4
Fatal error: Unable to open file for writing
#452
jessicarowell
closed
3 years ago
2
Error during make
#451
Patg13
closed
3 years ago
2
compute runtime value only once
#450
frederic-mahe
closed
3 years ago
1
set pointer to null
#449
frederic-mahe
closed
3 years ago
1
vsearch compilation issue
#448
DenisGoryunov
closed
3 years ago
8
qsegout / tsegout
#447
dleopold
closed
2 years ago
4
static compile vsearch
#446
hildebra
closed
3 years ago
4
-sample_delim in building OTU Table
#445
hjruscheweyh
closed
3 years ago
2
Chimera detection
#444
18AS
closed
3 years ago
1
closed_ref workflow as usearch -closed_ref
#443
jianshu93
closed
3 years ago
5
is test suite in sync with vsearch ?
#442
EricDeveaud
closed
2 years ago
4
Implementation of usearch_global LCA?
#441
martin-hartmann
closed
2 years ago
15
Update documentation to describe behaviour of allpairs_global
#440
torognes
closed
3 years ago
0
Rare hang when merging fastq files using multiple threads
#439
torognes
closed
2 years ago
1
Formatting SILVA to use with VSEARCH
#438
GeoMicroSoares
closed
3 years ago
6
permission issue on BigSour?
#437
FabianRoger
closed
3 years ago
5
Unmerged reads with short identical overlap
#436
andrefaure
closed
3 years ago
9
Speeding up writing of clusters
#435
vineeth-s
closed
2 years ago
1
Orient seqs by mapping to db
#434
KasperSkytte
closed
3 years ago
13
Output merged fasta sequences from allpairs_global?
#433
andrewd789
closed
2 years ago
8
small unexpected difference in id3 similarity value
#432
frederic-mahe
closed
1 year ago
3
big difference for clustering otus using vsearch and usearch
#431
jianshu93
closed
2 years ago
2
Unexpected unmerged reads
#430
olivierrue
closed
3 years ago
10
incorrect alignment output in --userfields
#429
dleopold
closed
3 years ago
6
cluster id in consensus file
#428
vineeth-s
closed
3 years ago
2
Vsearch for clustering protein sequences?
#427
jacquesantoine26
closed
3 years ago
1
Add option Sample like in Usearch
#426
tiagobrc
closed
2 years ago
5
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