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traitecoevo
/
APCalign
R package for accessing, matching and updating species names of Australian flora
https://traitecoevo.github.io/APCalign/
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ms structure
#142
wcornwell
closed
1 year ago
8
Planning our documentation
#141
fontikar
closed
6 months ago
10
Establish workflow for 'output'
#140
fontikar
closed
12 months ago
0
fixing bug
#139
ehwenk
closed
1 year ago
0
Update standardise_names.R
#138
ehwenk
closed
1 year ago
0
only reading in the necessary APNI names
#137
wcornwell
closed
1 year ago
0
Refinements to `taxonomic_splits` parameter
#136
ehwenk
closed
1 year ago
0
Tests reorganisation and restructruring
#135
dfalster
closed
1 year ago
0
Refactor & tidy
#134
dfalster
closed
1 year ago
0
Need to standardise `taxon_rank` values
#133
ehwenk
closed
1 year ago
1
Add option for `align_taxa` to output a subset of cols
#132
ehwenk
closed
1 year ago
0
Add messages summarising alignments and updates
#131
ehwenk
opened
1 year ago
2
taxonomic_splits should have a `keep_taxonomic_splits` option
#130
ehwenk
closed
1 year ago
7
error when zero species in a call match
#129
wcornwell
closed
1 year ago
3
Variable names ending with `_clean` should be `_aligned`
#128
ehwenk
closed
1 year ago
0
Refinements to `collapse_to_higher_taxon`
#127
ehwenk
closed
1 year ago
9
Standarise variable names
#126
ehwenk
closed
1 year ago
0
find and replace for input
#125
wcornwell
closed
1 year ago
0
`taxonomic_reference` in output of align_taxa still NA
#124
fontikar
closed
1 year ago
6
Update documentation to reflect new changes
#123
fontikar
closed
1 year ago
0
Rename one_to_many to taxonomic_splits or something we all agree is intuitive
#122
fontikar
closed
1 year ago
2
Rename output columns of update_taxonomy and create_taxononmic_update_lookup according to the table of APCalign of expected behaviour
#121
fontikar
closed
1 year ago
1
`one_to_many = return_all` output design
#120
fontikar
closed
1 year ago
15
Add tests for match_taxa(), align_taxa(), and create_taxonomic_update_lookup()
#119
ehwenk
closed
1 year ago
0
Add consistency test for updating taxon names
#118
ehwenk
closed
1 year ago
2
scientificNameID and taxonID are distinct concepts
#117
ehwenk
closed
1 year ago
4
Add consistency test for `match_taxa` and `align_taxa`
#116
ehwenk
closed
1 year ago
0
Collection of errors, inconsistencies fixed
#115
ehwenk
closed
1 year ago
0
Problem with recent changes to `identifiers`
#114
ehwenk
closed
1 year ago
1
Some genus name alignments also updating taxonomy
#113
ehwenk
closed
1 year ago
1
Reorder outputs to align with input
#112
dfalster
closed
1 year ago
1
Add identifier to genus level alignments
#111
ehwenk
closed
1 year ago
0
Make outputs same length as inputs (where relevant)
#110
dfalster
closed
1 year ago
0
Add ability to adjust fuzzy matching thresholds
#109
ehwenk
closed
1 year ago
0
Make output messages optional
#108
dfalster
closed
6 months ago
2
Review purpose of `get_updated_species_list`
#107
dfalster
closed
1 year ago
2
make input names consistent across main functions
#106
dfalster
closed
1 year ago
2
create_taxonomic_update_lookup: Incomplete testing of `one_to_many` option
#105
dfalster
closed
1 year ago
3
Ability to turn off apni matches
#104
ehwenk
closed
1 year ago
0
Bug fixes in alignment routine
#103
ehwenk
closed
1 year ago
0
Document functions & rework alignment messages
#102
ehwenk
closed
1 year ago
1
genus and higher level taxon rank detecting
#101
fontikar
closed
1 year ago
16
ability to turn off APNI matches
#100
fontikar
closed
1 year ago
2
CRAN Resubmission fixes
#99
fontikar
closed
1 year ago
0
working on #93
#98
wcornwell
closed
1 year ago
4
) or ( surrounded by spaces causes an error in align_taxa
#97
wcornwell
closed
1 year ago
3
Added test to detect NA genus IDs #88
#96
fontikar
closed
1 year ago
0
Added test to detect NA genus IDs #88
#95
fontikar
closed
1 year ago
4
fix genus-level alignments
#94
ehwenk
closed
1 year ago
4
Rename column names (apc_name and taxonomic_status_of_aligned_name)
#93
fontikar
closed
1 year ago
5
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