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uclahs-cds
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project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed
GNU General Public License v2.0
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Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-region]
#66
philsteinberg
opened
1 year ago
0
Launch Strelka2 + Battenberg + PyClone-VI seeds [HNSC multi-region]
#65
philsteinberg
closed
1 year ago
1
Update docker images in default.config
#64
philsteinberg
opened
1 year ago
6
Launch SomaticSniper + Battenberg + PhyloWGS seeds [HNSC single-region]
#63
philsteinberg
closed
1 year ago
3
Add new parser for HATCHET
#62
philsteinberg
opened
1 year ago
0
Run HATCHET on Head and Neck samples
#61
philsteinberg
opened
1 year ago
1
Convert FACETS output
#60
philsteinberg
closed
1 year ago
15
Fix HATCHET pipeline
#59
philsteinberg
opened
1 year ago
0
Launch SomaticSniper + Battenberg + DPClust [HNSC single-region]
#58
philsteinberg
closed
1 year ago
4
Launch SomaticSniper + Battenberg + PyClone-VI [HNSC single-region]
#57
philsteinberg
closed
1 year ago
1
Launch Strelka2 + Battenberg + PhyloWGS seeds [HNSC single-region]
#56
philsteinberg
closed
1 year ago
5
Pick which prostate tissues to run pipeline-call-SRC on
#55
philsteinberg
closed
7 months ago
4
Add sSNV caller head and neck sample vcf output path
#54
philsteinberg
closed
1 year ago
1
Fix plot dimensions
#53
philsteinberg
closed
2 years ago
0
Phils poster plots
#52
philsteinberg
closed
2 years ago
3
Phil draft seed plot
#51
philsteinberg
closed
2 years ago
0
Recreate Lydia's plot
#50
lydiayliu
closed
2 years ago
3
Phils get snv ccf
#49
philsteinberg
closed
2 years ago
0
Phils plotting src variability
#48
philsteinberg
closed
2 years ago
5
Phils parse pyclone ms
#47
philsteinberg
closed
2 years ago
1
Phils parse dpclust
#46
philsteinberg
closed
2 years ago
0
Get the CCF and # of SNVs in each subclone
#45
philsteinberg
opened
2 years ago
4
Phils parse pipeline output
#44
philsteinberg
closed
2 years ago
2
Visualization ideas for poster and presentation
#43
lydiayliu
closed
2 years ago
18
Phils run strelka2 battenberg dpclust
#42
philsteinberg
closed
2 years ago
2
Aneim run strelka2 battenberg pyclone vi multisample
#41
ANeimanGolden
closed
2 years ago
0
Launch Strelka2 + Battenberg + DPClust seeds [HNSC single]
#40
lydiayliu
closed
2 years ago
2
Launch Strelka2 + Battenberg + PyClone-VI seeds [HNSC multi-sample]
#39
lydiayliu
closed
2 years ago
0
Write parser script to gather results from PyClone-VI runs
#38
lydiayliu
closed
2 years ago
4
Evaluating the use of Seeds across SRC pipelines
#37
lydiayliu
closed
2 years ago
1
Analysis of Pyclone VI results
#36
philsteinberg
opened
2 years ago
6
Phils test run strelka2 battenberg pyclone
#35
philsteinberg
closed
2 years ago
7
Phils update readme
#34
philsteinberg
closed
2 years ago
3
Strelka2 + Battenberg + PyClone-VI seeds [HNSC single]
#33
lydiayliu
closed
2 years ago
3
Update SRC-pipeline example config
#32
philsteinberg
opened
2 years ago
0
Research Random Seed Selection
#31
philsteinberg
closed
2 years ago
15
Phils test run pipeline call src strelka2
#30
philsteinberg
closed
2 years ago
7
script for testing pipeline with SomaticSniper as snv caller
#29
ANeimanGolden
closed
2 years ago
1
Add read-count functionality to address multiple ALT reads
#28
philsteinberg
opened
2 years ago
0
Refactor `list_variants` by adding to superclass
#27
philsteinberg
opened
2 years ago
0
Add support for TITAN in pipeline-call-SRC, perform integration test
#26
lydiayliu
opened
2 years ago
0
Add support for FACETS in pipeline-call-SRC, perform integration test
#25
lydiayliu
opened
2 years ago
0
Add support for Battenberg in pipeline-call-SRC, perform integration test
#24
lydiayliu
closed
2 years ago
0
Add new parser for TITAN
#23
lydiayliu
opened
2 years ago
0
Add new parser for FACETS
#22
lydiayliu
opened
2 years ago
3
Add new parser for Battenberg
#21
lydiayliu
closed
2 years ago
21
New CNA parsers for pipeline-call-SRC
#20
lydiayliu
opened
2 years ago
0
Update README at SRC-util
#19
lydiayliu
opened
2 years ago
0
Create pull_request_template.md
#18
lydiayliu
closed
2 years ago
1
Add PR template
#17
tyamaguchi-ucla
closed
2 years ago
0
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