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umccr
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dracarys
:dragon_face: DRAGEN workflow tidying :fire:
https://umccr.github.io/dracarys/
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Adapter content plot refactor
#149
pdiakumis
opened
17 hours ago
0
Expose raw column names
#148
pdiakumis
opened
2 weeks ago
0
Major refactor of R6 Wf classes
#147
pdiakumis
closed
1 day ago
1
Conpair: convert SampleID to phenotype
#146
pdiakumis
opened
1 month ago
0
DRAGEN workflow support
#145
pdiakumis
closed
1 month ago
0
Better R6 mechanism for specifying regexes
#144
pdiakumis
closed
1 day ago
0
Use sample alias for VCF parser
#143
pdiakumis
closed
1 month ago
0
tsov2: handle NTC sar edge case
#142
pdiakumis
closed
1 month ago
0
TSO SampleAnalysisResults: handle empty nirvanaVersionList
#141
pdiakumis
closed
1 month ago
0
NEWS v0.16.0
#140
pdiakumis
closed
1 month ago
0
Use bump-my-version
#139
pdiakumis
closed
1 month ago
0
Summary report: sample count chunk eval
#138
pdiakumis
opened
2 months ago
0
MultiQC: add sash support
#137
pdiakumis
closed
2 months ago
0
MultiQC: add Sash support
#136
pdiakumis
closed
2 months ago
0
TSO500 ctDNA v2 support
#135
pdiakumis
closed
2 months ago
1
Add dragen R6 subclass
#134
pdiakumis
closed
1 month ago
0
TSO500 ctDNA v1 refactor
#133
pdiakumis
closed
2 months ago
0
Vignettes: switch to Quarto
#132
pdiakumis
opened
2 months ago
0
Parquet writing: compare nanoparquet to arrow
#131
pdiakumis
opened
2 months ago
0
Revamp Workflow Tidier
#130
pdiakumis
closed
1 day ago
0
Sash support
#129
pdiakumis
closed
2 months ago
0
Determine topup/rerun samples
#128
pdiakumis
closed
2 months ago
0
Umccrise tidy
#127
pdiakumis
closed
2 months ago
0
Ingest umccrise conpair contamination/concordance metrics
#126
pdiakumis
closed
2 months ago
1
umccrise: refactor cancer report table parsers
#125
pdiakumis
closed
3 months ago
0
Support BCL Convert 4.2.7
#124
pdiakumis
closed
3 months ago
0
BCL Convert: check differences between 3.7.5 and 4.2.7
#123
pdiakumis
opened
3 months ago
0
docker: use multi-stage build
#122
pdiakumis
closed
3 months ago
0
Initial bcl_convert refactor
#121
pdiakumis
closed
3 months ago
0
Bioinformatics Sample ID
#120
pdiakumis
closed
2 months ago
1
Mapping metrics: include contamination score
#119
pdiakumis
closed
1 month ago
0
gds_files_list recursive
#118
pdiakumis
closed
6 months ago
0
BSSH: explore run folder contents
#117
pdiakumis
closed
6 months ago
0
Alignment QC: mini cleanup
#116
pdiakumis
closed
6 months ago
0
Support BCL Convert Reports files
#115
pdiakumis
closed
6 months ago
0
Interopqc MultiQC JSON support
#114
pdiakumis
closed
7 months ago
0
Add support for BCL Convert Reports files
#113
pdiakumis
closed
6 months ago
1
Remove metadata tidiers and portaldb queries
#112
pdiakumis
closed
7 months ago
0
Documentation update
#111
pdiakumis
closed
8 months ago
0
Display samples with empty workflow field
#110
pdiakumis
opened
8 months ago
0
Add S3 tidy support
#109
pdiakumis
closed
8 months ago
0
Add S3 tidy support
#108
pdiakumis
closed
8 months ago
0
Fix multi-bug hotchpotch
#107
pdiakumis
closed
9 months ago
0
Update GitHub Actions
#106
pdiakumis
closed
11 months ago
0
Alignment QC reporter
#105
pdiakumis
closed
11 months ago
0
cttso: Column `x` not found in `.data`
#104
pdiakumis
closed
11 months ago
2
Major DRAGEN module refactor
#103
pdiakumis
closed
1 year ago
0
Move Rmd report templates to gpgr
#102
pdiakumis
opened
1 year ago
0
Oncoanalyser/sash/wts-qc/star-align metadata parsing
#101
pdiakumis
closed
1 year ago
0
Meta: parse oncoanalyser, sash, wts_alignment_qc and star_alignment
#100
pdiakumis
closed
1 year ago
0
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