issues
search
umccr
/
nextflow-stack
AWS stack to run Nextflow pipelines on Batch using shared resources
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Added new script for running oncoanalyser through orcabus
#115
alexiswl
opened
2 weeks ago
7
Bump oncoanalyser: 42ee926
#114
scwatts
closed
2 months ago
0
Bump sash: 0.5.0
#113
scwatts
closed
2 months ago
0
Use commit hash as version for oncoanalyser
#112
scwatts
closed
2 months ago
0
Correct SPOT compute environment configuration
#111
scwatts
closed
2 months ago
0
Override defaults to associate public IP address with EC2 instances
#110
scwatts
closed
2 months ago
0
Apply optimisations for oncoanalyser processes
#109
scwatts
closed
2 months ago
0
Bump braces from 3.0.2 to 3.0.3
#108
dependabot[bot]
closed
2 months ago
0
Support MarkDups WGS BAM inputs for oncoanalyser
#107
scwatts
closed
2 months ago
0
Bump sash: 0.4.13
#106
scwatts
closed
4 months ago
0
Update STAR Docker image in star-align-nf
#105
scwatts
closed
4 months ago
0
Upgrade oncoanalyser to latest
#104
scwatts
closed
4 months ago
0
Bump sash: 0.4.12
#103
scwatts
closed
6 months ago
0
Fix Batch queue SPOT fleet role
#102
scwatts
closed
6 months ago
0
Use correct Batch queue for sash LINX visualiser
#101
scwatts
closed
6 months ago
0
Adjust LINX visualiser configuration
#100
scwatts
closed
6 months ago
0
Bump Nextflow: 23.10.1
#99
scwatts
closed
6 months ago
0
Use upstream amazon-ebs-autoscale GH repo
#98
scwatts
closed
7 months ago
0
Use fixed GRIDSS image for VIRUSBreakend
#97
scwatts
closed
7 months ago
0
Apply tags to NF task Batch jobs
#96
scwatts
closed
7 months ago
0
Fix Docker socket mount
#95
scwatts
closed
7 months ago
0
Use correct job definition argument for IAM role
#94
scwatts
closed
7 months ago
0
Bump sash: 0.4.11
#93
scwatts
closed
7 months ago
0
Update to aws.cdk 2.131.0
#92
scwatts
closed
7 months ago
0
Update Docker images
#91
scwatts
closed
7 months ago
0
Bump @babel/traverse from 7.21.4 to 7.24.0
#90
dependabot[bot]
closed
7 months ago
0
Update to align with recent infrastructure changes
#89
scwatts
closed
7 months ago
0
Bump oncoanalyser: 0.3.1
#88
scwatts
closed
7 months ago
0
Bump sash: 0.4.10
#87
scwatts
closed
7 months ago
0
Add cost allocation tags and propagate the tags
#86
brainstorm
closed
8 months ago
4
Use --tag on submit_job for cost allocation purposes
#85
brainstorm
closed
8 months ago
1
Bump oncoanalyser: 0.2.7
#84
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.6
#83
scwatts
closed
11 months ago
0
Provide parent LINX plot dir as oncoanalyser input
#82
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.5
#81
scwatts
closed
11 months ago
0
Include user data in pipeline launch template
#80
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.4
#79
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.3
#78
scwatts
closed
11 months ago
0
Fix oncoanalyser run.sh mode regex
#77
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.2
#76
scwatts
closed
11 months ago
0
Fix star-align-nf local job execution
#75
scwatts
closed
11 months ago
0
Update OpenJDK in Dockerfiles to fix build
#74
scwatts
closed
11 months ago
0
Bump oncoanalyser: 0.2.1
#73
scwatts
closed
11 months ago
0
Bump sash: 0.4.5
#72
scwatts
closed
11 months ago
0
Add compute and storage settings
#71
scwatts
closed
11 months ago
0
Fix oncoanalyser run script custom config arg
#70
scwatts
closed
1 year ago
0
Infer oncoanalyser output subdirectory from base pipeline directory
#69
scwatts
closed
1 year ago
1
Bump sash version: 0.1.11 → 0.1.12
#68
scwatts
closed
1 year ago
0
Bump oncoanalyser version: 0.1.2 → 0.1.3
#67
scwatts
closed
1 year ago
0
Increase GRIDSS assembly default time limit
#66
scwatts
closed
1 year ago
0
Next