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unipept
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unipept-database
Makes database tables and indices for Unipept
MIT License
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Bump clap from 4.4.6 to 4.5.18 in /scripts/helper_scripts/unipept-database-rs
#67
dependabot[bot]
opened
1 month ago
0
Bump regex from 1.10.2 to 1.11.0 in /scripts/helper_scripts/unipept-database-rs
#66
dependabot[bot]
opened
1 month ago
0
Bump anyhow from 1.0.75 to 1.0.89 in /scripts/helper_scripts/unipept-database-rs
#65
dependabot[bot]
opened
1 month ago
0
Bump clap from 4.4.6 to 4.5.16 in /scripts/helper_scripts/unipept-database-rs
#64
dependabot[bot]
closed
1 month ago
1
Bump regex from 1.10.2 to 1.10.6 in /scripts/helper_scripts/unipept-database-rs
#63
dependabot[bot]
closed
1 month ago
1
Automatically generate ".version" with current UniProt-version
#62
pverscha
closed
3 months ago
0
Suffix array
#61
tibvdm
opened
3 months ago
0
Bump anyhow from 1.0.75 to 1.0.86 in /scripts/helper_scripts/unipept-database-rs
#60
dependabot[bot]
closed
1 month ago
1
Bump regex from 1.10.2 to 1.10.5 in /scripts/helper_scripts/unipept-database-rs
#59
dependabot[bot]
closed
2 months ago
1
Bump clap from 4.4.6 to 4.5.13 in /scripts/helper_scripts/unipept-database-rs
#58
dependabot[bot]
closed
2 months ago
1
Bump chrono from 0.4.31 to 0.4.38 in /scripts/helper_scripts/unipept-database-rs
#57
dependabot[bot]
opened
4 months ago
0
Bump strum from 0.25.0 to 0.26.3 in /scripts/helper_scripts/unipept-database-rs
#56
dependabot[bot]
opened
4 months ago
0
Optimize the current relational database for future compatibility with the suffix array
#55
bmesuere
closed
5 months ago
0
Create new target in build-database.sh for input of suffix array construction
#54
bmesuere
closed
5 months ago
0
Migrate to Postgres + make scripts more consistent
#53
stijndcl
opened
6 months ago
0
Add Dependabot
#52
stijndcl
closed
4 months ago
0
Add sort_peptides back temporarily
#51
stijndcl
closed
7 months ago
1
Fix FA format string
#50
stijndcl
closed
8 months ago
0
Output of functional-analysis binary is not the same as before
#49
pverscha
closed
8 months ago
0
Improve the check for the type of parser that should be used
#48
pverscha
closed
8 months ago
0
Checking for file extension is not always sufficient to determine parser type
#47
pverscha
closed
8 months ago
1
Fix bugs related to LZ4 decompression in non-database steps
#46
stijndcl
closed
8 months ago
0
Automatically switch between XML and DAT parser for UniProtKB
#45
pverscha
closed
8 months ago
0
Update static database action according to migration to Rust and LZ4
#44
pverscha
closed
8 months ago
0
Speed up database construction pipeline
#43
pverscha
closed
8 months ago
0
Fix requested changes from Pieter for Rust-only version
#42
stijndcl
closed
8 months ago
0
Download NCBI Taxdmp file in CI
#41
stijndcl
closed
8 months ago
2
Remove all Java and JS tools, use Lz4
#40
stijndcl
closed
8 months ago
5
Rust DAT parser
#39
stijndcl
closed
9 months ago
0
Re-write WriteToChunk and TaxaByChunk in Rust
#38
stijndcl
closed
9 months ago
0
Update workflow for static database creation
#37
pverscha
closed
11 months ago
0
Update the taxon computation jar
#36
pverscha
closed
12 months ago
0
Fix sequences not getting printed correctly
#35
stijndcl
closed
1 year ago
0
Improvements to the database construction pipeline
#34
pverscha
opened
1 year ago
3
Rust Taxon Dump Parser
#33
stijndcl
closed
10 months ago
0
Rust LCA
#32
stijndcl
closed
10 months ago
10
Add first Rust tools
#31
stijndcl
closed
1 year ago
0
Provide fix for empty functional annotations in database
#30
pverscha
closed
1 year ago
0
Add bacterium taxon to filter
#29
pverscha
closed
1 year ago
0
Directly keep track of taxa associated with peptides
#28
pverscha
closed
4 months ago
0
Add KEGG identifiers to Unipept database
#27
pverscha
closed
4 months ago
0
Optimise database schema
#26
pverscha
closed
1 year ago
0
Remove all references to proteomes from the Unipept database
#25
pverscha
closed
1 year ago
0
Check out warnings
#24
pverscha
opened
2 years ago
0
Bump junit from 4.11 to 4.13.1 in /scripts/helper_scripts/parser
#23
dependabot[bot]
opened
2 years ago
0
Bump junit from 4.11 to 4.13.1
#22
dependabot[bot]
opened
3 years ago
1
Improve run time of data construction
#21
pverscha
closed
3 years ago
0
cleanup database upgrade scripts
#20
pverscha
closed
3 years ago
2
Replace makefile and configure with single run script
#19
ninewise
closed
3 years ago
4
Do not expect exact URLs
#18
ninewise
closed
4 years ago
0
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