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vanvalenlab
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deepcell-tracking
Track cells and build cell lineages
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Replace deprecated pypi publish action version.
#125
rossbar
closed
3 months ago
0
Revert "Rename pypi workflow."
#124
rossbar
closed
3 months ago
0
Rename pypi workflow.
#123
rossbar
closed
3 months ago
0
Tweak yaml syntax.
#122
rossbar
closed
3 months ago
0
Update action for deploying to pypi
#121
rossbar
closed
3 months ago
0
Bump version to 0.6.5
#120
msschwartz21
closed
3 months ago
1
Add epsilon to standard deviation normalization
#119
msschwartz21
closed
4 months ago
2
Add references for the AA and TE scores
#118
msschwartz21
closed
1 year ago
0
benchmark_division_performance can't be found in isbi_utils.py
#117
SBassler
closed
1 year ago
4
Bump default action versions.
#116
rossbar
closed
1 year ago
1
Reuse indexed array to avoid extra array copies.
#115
rossbar
closed
1 year ago
0
Cast data to correct type in `get_image_features`
#114
msschwartz21
closed
1 year ago
0
Lint with ruff
#113
rossbar
closed
1 year ago
2
Fix failures related to expired usage patterns in dependencies
#112
rossbar
closed
1 year ago
0
Add support for Python 3.10
#111
rossbar
closed
1 year ago
0
REL: pin numpy and update deepcell-toolbox dependency
#110
rossbar
closed
1 year ago
2
Add support for numpy 1.24.0
#109
msschwartz21
closed
1 year ago
2
Implement correct usage of crop parameter in CellTracker
#108
msschwartz21
closed
1 year ago
1
Add support for ISBI inputs to the metrics package
#107
msschwartz21
closed
2 years ago
0
Add a new option to initialize directly from graphs
#106
msschwartz21
opened
2 years ago
0
Correct keys in correct_shifted_divisions
#105
msschwartz21
closed
2 years ago
0
Bump to version 0.6.2
#104
msschwartz21
closed
2 years ago
0
Classify divisions that are +/- 1 frame as correct
#103
msschwartz21
closed
2 years ago
0
Fix bug in calculation of fraction missed divisions
#102
msschwartz21
closed
2 years ago
0
Identify how divisions in t +/- 1 frame are handled in the metrics package
#101
msschwartz21
closed
1 year ago
1
Error in fraction missed divisions calculation
#100
msschwartz21
closed
2 years ago
0
Bump to 0.6.1
#99
msschwartz21
closed
2 years ago
0
Enable option for fixed size crops in get_image_features
#98
vanvalen
closed
2 years ago
0
Bump version to 0.6.0
#97
msschwartz21
closed
2 years ago
0
Improve testing by splitting functions to one test case per function
#96
msschwartz21
opened
2 years ago
0
Update metrics for evaluating tracking performance
#95
msschwartz21
closed
2 years ago
2
Drop support for python 3.6 and bump deepcell-toolbox requirement
#94
msschwartz21
closed
2 years ago
0
Tracking models
#93
Ciro1990
closed
2 years ago
1
Add additional metrics to report in classify_divisions
#92
msschwartz21
closed
2 years ago
1
Update metrics reported by `isbi_utils.benchmark_division_performance` to match the metrics that we are publishing in the paper
#91
msschwartz21
closed
2 years ago
4
Bump copyright to 2022 and improve error message
#90
msschwartz21
closed
2 years ago
0
Update `utils.trk_stats` to return a dictionary of stats as output
#89
msschwartz21
closed
2 years ago
0
Fix bug in `is_valid_lineage`; daughters can be < parent.
#88
willgraf
closed
3 years ago
0
Bump version to 0.5.3.
#87
willgraf
closed
3 years ago
0
windows python 3.9.2 deepcell install problem resolved
#86
zverozabr
closed
3 years ago
4
pip install deepcell in windows 10 problem
#85
zverozabr
closed
3 years ago
0
Speed up `trks_stats` by a factor of 5
#84
willgraf
closed
3 years ago
0
Bump the version to 0.5.1.
#83
willgraf
closed
3 years ago
0
Use `np.any` instead of `np.sum` when finding all frames that contain a given object.
#82
willgraf
closed
3 years ago
0
Bump version to `0.5.0`.
#81
willgraf
closed
3 years ago
0
Fix `norecursedirs` to ignore build directory
#80
willgraf
closed
3 years ago
0
Migrate `Track` and `concat_tracks` to `deepcell.data.tracking`.
#79
willgraf
closed
3 years ago
0
Comparison in Memory
#78
MekWarrior
opened
3 years ago
1
Fix bad warning message in `is_valid_lineage`
#77
willgraf
closed
3 years ago
0
Validate parent lineage field as well as daughters.
#76
willgraf
closed
3 years ago
1
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