widdowquinn find_differential_primers issues

widdowquinn / find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

https://widdowquinn.github.io/find_differential_primers/

MIT License

57 stars 25 forks source link

issues

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Problem with setup.py in 0.1.4 stable release: NameError: name 'version' is not defined at line 32

#60 davidjstudholme opened 10 months ago
0
importlib.metadata.PackageNotFoundError: No package metadata was found for diagnostic-primers

#59 davidjstudholme opened 10 months ago
0
Small error in documentation file: docs/quickstart.rst

#58 davidjstudholme opened 10 months ago
0
Simple method for providing more params to blastn

#57 nick-youngblut opened 3 years ago
0
added ArgumentDefaultsHelpFormatter to all parsers

#56 nick-youngblut closed 3 years ago
3
parameter defaults

#55 nick-youngblut closed 3 years ago
13
conda commands

#54 maguileraf closed 3 years ago
3
Problems with use of pdp

#53 aiqubo opened 3 years ago
3
Clarify documentation regarding pdp/find_differential_primer versions

#52 widdowquinn opened 3 years ago
0
Problems with installation of Find differential Primers on Ubuntu

#51 J123T closed 3 years ago
6
Fix broken bioconda recipe

#50 widdowquinn closed 3 years ago
2
conda install pdp not working

#49 rsiani closed 4 years ago
1
is pdp still available?

#48 AlexGaithuma closed 4 years ago
1
Use `mypy` to aid with type checking

#47 widdowquinn opened 4 years ago
0
Add `pdp config` option to take `pyani download` output and create a config file.

#46 widdowquinn opened 4 years ago
0
Put user documentation on ReadTheDocs

#45 widdowquinn opened 4 years ago
0
Add option to multiplex primers

#44 widdowquinn opened 4 years ago
0
Update logging exception formats

#43 widdowquinn opened 4 years ago
0
Add option to use online Primer-BLAST for off-target screening

#42 widdowquinn opened 4 years ago
0
Supply Flask interface/API onto SQLite backend

#41 widdowquinn opened 4 years ago
0
Store primer design information in SQLite backend

#40 widdowquinn opened 4 years ago
0
Stage third-party tool output in a temp directory for checking

#39 widdowquinn opened 5 years ago
0
Add `--recovery` option to schedulable subcommands

#38 widdowquinn closed 5 years ago
2
Add `--recovery` option to subcommands

#37 widdowquinn closed 5 years ago
1
Primer3 v2

#36 widdowquinn closed 5 years ago
1
refactor parsers for `pdp` subcommands into individual `.py` files

#35 widdowquinn closed 5 years ago
0
Fixes #32 and #33

#34 widdowquinn closed 5 years ago
1
Add diversity measure to output of `pdp extract`

#33 widdowquinn closed 5 years ago
1
Add filter option that targets variable regions within a single class

#32 widdowquinn closed 5 years ago
1
Add filter option that restricts primer design to regions specific to a target class

#31 widdowquinn opened 5 years ago
1
Replace `ePrimer3` with modern Primer3 (v2+)

#30 widdowquinn closed 5 years ago
4
Use read mapper as alternative to `PrimerSearch`

#29 widdowquinn opened 5 years ago
8
Add primer location output for use with IGV

#28 widdowquinn closed 5 years ago
1
Progress bar formatting in `pdp config` is not right

#27 widdowquinn closed 5 years ago
2
Filter subcommand

#26 widdowquinn closed 6 years ago
1
Filter subcommand

#25 widdowquinn closed 6 years ago
0
Refactor extract

#24 widdowquinn closed 6 years ago
1
Some predicted primers have runs of `N` in the amplicons

#23 widdowquinn opened 6 years ago
0
If ePrimer3 does not generate primers, the pipeline hangs

#22 widdowquinn opened 6 years ago
0
Tag new release?

#21 druvus opened 6 years ago
5
Docs

#20 widdowquinn closed 6 years ago
0
Extend tests

#19 widdowquinn closed 6 years ago
0
Tools test

#18 widdowquinn closed 6 years ago
1
add primersearch code

#17 widdowquinn closed 6 years ago
1
Extend tests

#16 widdowquinn closed 6 years ago
1
modifications for config command

#15 widdowquinn closed 6 years ago
1
ValueError: Your XML file did not start with <?xml... but instead '\n'

#14 BioJNO opened 7 years ago
1
Eprimer3 test

#13 widdowquinn closed 7 years ago
1
Eprimer3 test

#12 widdowquinn closed 7 years ago
1
Add ePrimer3 tests

#11 widdowquinn closed 7 years ago
1