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wikipathways
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pathway-figure-ocr
Extracting gene sets from published pathway figures
Apache License 2.0
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Bump url-parse from 1.5.1 to 1.5.3 in /xpm2nix/node-packages
#36
dependabot[bot]
closed
2 years ago
1
Bump tar from 6.1.0 to 6.1.11 in /xpm2nix/node-packages
#35
dependabot[bot]
closed
2 years ago
0
Bump tar from 6.1.0 to 6.1.5 in /xpm2nix/node-packages
#34
dependabot[bot]
closed
2 years ago
1
Potential improvements to Jupyter and other infra
#33
ariutta
opened
3 years ago
0
Bump normalize-url from 4.5.0 to 4.5.1 in /xpm2nix/node-packages
#32
dependabot[bot]
closed
3 years ago
1
Bump ws from 7.4.4 to 7.4.6 in /xpm2nix/node-packages
#31
dependabot[bot]
closed
3 years ago
0
Bump browserslist from 4.16.3 to 4.16.6 in /xpm2nix/node-packages
#30
dependabot[bot]
closed
3 years ago
0
Suggested improvement: Show full publication title when hovering over "paper title" column in table.
#29
khanspers
closed
3 years ago
1
Incorrect link in Shiny
#28
khanspers
opened
3 years ago
0
MSigDb unique gene count
#27
AlexanderPico
closed
3 years ago
6
New gene counts
#26
AlexanderPico
closed
3 years ago
2
Intersection of CMap and PFOCR extracted chemicals
#25
AlexanderPico
closed
3 years ago
6
Implement PFOCR-based results annotation in BTE
#24
AlexanderPico
opened
3 years ago
2
Produce monthly WP JSON for BTE
#23
AlexanderPico
opened
3 years ago
2
Utilize the hierarchical structure of pathway content
#22
AlexanderPico
opened
3 years ago
2
Update of pathway figure content and annotations
#21
AlexanderPico
closed
2 years ago
2
Upgrade of pathway figure collection, processing and deposition pipeline
#20
AlexanderPico
opened
3 years ago
2
Shiny app: Fix column widths
#19
AlexanderPico
opened
3 years ago
0
Shiny app: Mouse-over values
#18
AlexanderPico
opened
3 years ago
0
Continue automation of PFOCR
#17
AlexanderPico
closed
3 years ago
8
Additional content extraction and annotations from pathway figures
#16
AlexanderPico
opened
4 years ago
28
Support expansion and filtering operations in BTE through the PFOCR API with expanded concept extraction
#15
AlexanderPico
closed
3 years ago
5
Establish infrastructure to automate the PFOCR pipeline
#14
AlexanderPico
closed
4 years ago
4
Provide PFOCR data for external ranking and sorting
#13
AlexanderPico
closed
4 years ago
4
Establish a BioThings API for access to PFOCR data
#12
AlexanderPico
closed
4 years ago
31
Normalize entities from beta release of PFOCR data
#11
AlexanderPico
closed
4 years ago
1
Review article on pathway analysis methods
#10
AlexanderPico
opened
4 years ago
0
Identify PTMs
#9
ariutta
opened
4 years ago
0
Paper on automated concept annotation for biomedical full text articles
#8
ariutta
opened
4 years ago
0
Use updated homoglyphs package
#7
ariutta
opened
5 years ago
0
please add a README
#6
egonw
closed
6 years ago
1
matches missing from figures__xrefs view
#5
AlexanderPico
opened
6 years ago
6
Expand on numeric ranges
#4
AlexanderPico
closed
6 years ago
2
Add new_to_wp column to figures__xrefs
#3
AlexanderPico
opened
6 years ago
0
Add lexicon source column to figures__xrefs
#2
AlexanderPico
closed
6 years ago
0
batches table
#1
AlexanderPico
closed
6 years ago
0
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