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wtsi-npg
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bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
http://wtsi-npg.github.io/bambi
GNU Affero General Public License v3.0
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15
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Added dependabot info in ChangeLog
#210
avnishsinghh
closed
2 weeks ago
0
Bump actions/checkout from 3 to 4
#209
dependabot[bot]
closed
2 weeks ago
0
Bump docker/login-action from 2 to 3
#208
dependabot[bot]
closed
2 weeks ago
0
Added dependabot.yml to auto-update GitHub actions.
#207
avnishsinghh
closed
2 weeks ago
0
update container image labels
#206
avnishsinghh
closed
2 months ago
0
[Snyk] Security upgrade debian from bookworm to 12.6
#205
snyk-io[bot]
closed
3 months ago
1
Merge from devel to create release 0.18.0
#204
jmtcsngr
closed
4 months ago
0
prep release 0.18.0
#203
jmtcsngr
closed
4 months ago
0
update apt cache before changing deps
#202
jmtcsngr
closed
4 months ago
0
Updated to handle NanoSeq
#201
jenniferliddle
closed
4 months ago
2
[Snyk] Security upgrade debian from bookworm to 12.5
#200
snyk-io[bot]
closed
5 months ago
1
fix conflicts Changelog
#199
jmtcsngr
closed
1 year ago
0
Merge from devel to create release 0.17.1
#198
jmtcsngr
closed
1 year ago
0
update ChangeLog
#197
jmtcsngr
closed
1 year ago
0
Add docker building and publishing to ghcr.io with github actions
#196
jmtcsngr
closed
1 year ago
2
Create release 0.17.0
#195
jenniferliddle
closed
1 year ago
0
Merge from devel to create release 0.17.0
#194
jenniferliddle
closed
1 year ago
0
Change the way the nocall-quality option works
#193
jenniferliddle
closed
1 year ago
0
Release 0.16.1
#192
jenniferliddle
closed
1 year ago
0
Update Changelog
#191
jenniferliddle
closed
1 year ago
0
Make the --nocall-quality option apply to barcode quality tags
#190
jenniferliddle
closed
1 year ago
1
Release 0.16.0
#189
jenniferliddle
closed
1 year ago
0
Updated Changelog file for 0.16.0
#188
jenniferliddle
closed
1 year ago
0
Change option name from 'min_default_quality' to 'nocall_quality'
#187
jenniferliddle
closed
1 year ago
0
Changes for NovaSeqX
#186
jenniferliddle
closed
1 year ago
6
prep for release 0.15.0
#185
dkj
closed
1 year ago
0
Handle NovaseqX output
#184
jenniferliddle
closed
1 year ago
4
Remove libgd3 from the host runner
#183
kjsanger
closed
1 year ago
0
Use git clone over https to get htslib
#182
kjsanger
closed
1 year ago
0
Move from checkout@v2 to @v3
#181
kjsanger
closed
1 year ago
0
Move runner from ubuntu-18.04 to ubuntu-latest
#180
kjsanger
closed
1 year ago
0
Added --ignore-missing option to cope with missing bcl files
#179
jenniferliddle
closed
3 years ago
3
Option to continue process even if missing cbcls
#178
jmtcsngr
closed
10 months ago
1
Running "make check" leaves a bunch of bambi.* directories in /tmp
#177
jkbonfield
opened
3 years ago
0
stringop-truncation warning with GCC >=8
#176
kjsanger
closed
3 years ago
1
Fixed memory leak in check_bcl
#175
jenniferliddle
closed
3 years ago
0
prep for release 0.14.0 (merge devel to master)
#174
dozy
closed
3 years ago
0
Configuration improvements
#173
jenniferliddle
closed
3 years ago
2
memory leak in check_bcl
#172
jenniferliddle
closed
3 years ago
0
Improved error handling
#171
jenniferliddle
closed
3 years ago
0
Build problem with htslib
#170
evolgenomics
closed
3 years ago
5
Add substitution_analysis command
#169
jenniferliddle
closed
3 years ago
0
Change to Github Actions from Travis CI
#168
FredDodd6
closed
3 years ago
0
Missing curl lib give misleading "wrong htslib version" error from configure script
#167
FredDodd6
closed
3 years ago
0
Minor changes to handle barcode files containing dual tags with
#166
jenniferliddle
closed
3 years ago
2
Include BC: tag in read group headers
#165
kiwiroy
closed
4 years ago
2
strncpy off by one error
#164
mp15
closed
3 years ago
1
version check error message is misleading
#163
mp15
closed
3 years ago
0
Number of threads for bcl check as option
#162
jmtcsngr
opened
4 years ago
0
prep for release 0.13.1
#161
dozy
closed
5 years ago
0
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