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wtsi-npg
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genotyping
Components of the WTSI genotype analysis pipeline.
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Bump actions/cache from 3 to 4
#467
dependabot[bot]
closed
2 weeks ago
0
Added dependabot.yml to auto-update GitHub actions
#466
avnishsinghh
closed
2 weeks ago
0
Update Perlbrew checksum for release 0.99
#465
kjsanger
closed
1 month ago
0
Removing Tidyp dependency from CI
#464
avnishsinghh
closed
5 months ago
0
Add GitHub Actions CI configuration
#463
kjsanger
closed
8 months ago
0
Changes to tests for iRODS v.4.2
#462
mgcam
opened
9 months ago
0
Add Fluidigm data aggregation step to documentation
#461
kjsanger
closed
1 year ago
0
Add summary of Fluidigm process
#460
kjsanger
closed
1 year ago
0
Change name of ML warehouse database
#459
kjsanger
closed
2 years ago
0
Add snpset name CoreExome-24v1-2
#458
iainrb
closed
6 years ago
0
Add Infinium snpset Omni2-5Exome-8v1-3
#457
iainrb
closed
6 years ago
0
Add new snpset to snpsets.ini
#456
iainrb
closed
6 years ago
1
Additional tests for QC plex
#455
iainrb
opened
7 years ago
0
Failure to restart quality_control task after error
#454
iainrb
opened
7 years ago
0
Log priority in Sequenom::AssayDataObject
#453
iainrb
opened
7 years ago
0
Failure to install git_version.rb
#452
iainrb
opened
7 years ago
0
Add option to publish Fluidigm QC results to iRODS
#451
iainrb
closed
7 years ago
0
Refactored Fluidigm QC, with greater scalability
#450
iainrb
closed
7 years ago
0
Fluidigm QC refactoring
#449
iainrb
closed
7 years ago
1
More robust tempdir management
#448
iainrb
closed
7 years ago
0
Absolute path in QC symlink
#447
iainrb
opened
7 years ago
0
Fixes to temporary directory creation
#446
iainrb
closed
7 years ago
1
Fluidigm QC code and tests
#445
iainrb
closed
7 years ago
0
Ensure valid combination of VCF and plex manifests in workflow YML
#444
iainrb
closed
7 years ago
0
Identity gencall collator merge
#443
iainrb
closed
7 years ago
0
Add tests for dry-run mode of Fluidigm archive script
#442
iainrb
closed
7 years ago
0
DRAFT Collator merge PR 3 of 3
#441
iainrb
closed
7 years ago
1
DRAFT Gencall merge PR 2 of 3
#440
iainrb
closed
7 years ago
1
DRAFT Identity merge PR 1 of 3
#439
iainrb
closed
7 years ago
2
In R scripts, remove references to Sequenom and add licence statements
#438
iainrb
closed
7 years ago
0
publish_snpset.pl should have a version option
#437
iainrb
opened
7 years ago
0
For install.sh, use -e instead of checking individual return values
#436
iainrb
closed
7 years ago
1
Download cpanm tarball, validate and install
#435
iainrb
closed
7 years ago
0
Illuminus workflow doesn't check for required argument plex_manifest
#434
keithj
closed
7 years ago
2
Bugfix; correct name of identity check script
#433
iainrb
closed
7 years ago
0
Remove WIP from Bayesian ID check filenames
#432
iainrb
closed
7 years ago
0
Improvements to install.sh
#431
iainrb
closed
7 years ago
0
install.sh tries to install Ruby modules to a production install path
#430
keithj
closed
7 years ago
1
Ensure that the production iRODS cannot be used in tests with the new clients
#429
keithj
closed
7 years ago
0
Ensure that failed uploads can be overwritten by re-runs.
#428
keithj
closed
7 years ago
0
Tests should skip if TEST_AUTHOR is not set
#427
keithj
opened
8 years ago
0
Ensure idempotence in file upload
#426
keithj
opened
8 years ago
0
Updated logging/documentation in command line scripts
#425
iainrb
closed
8 years ago
1
Add new collector and archiver classes
#424
iainrb
closed
8 years ago
0
changed from (old) Warehouse to MLWarehouse
#423
iainrb
closed
8 years ago
0
Archive script for Fluidigm results
#422
iainrb
closed
8 years ago
2
Fluigidm metadata updater is using the old warehouse
#421
keithj
closed
8 years ago
1
Take advantage of per-class logging for iRODS publish/update scripts
#420
iainrb
closed
8 years ago
2
Changelog minor issues
#419
iainrb
closed
7 years ago
1
Exclude dot from iRODS type metadata query
#418
keithj
closed
8 years ago
0
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