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wwood
/
CoverM
Read coverage calculator for metagenomics
GNU General Public License v3.0
297
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30
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Naive question: reads mapping to multiple locations
#69
ntromas
opened
3 years ago
0
Option to produce percent identity summary
#68
edgraham
opened
3 years ago
1
Upgrade to GitHub-native Dependabot
#67
dependabot-preview[bot]
closed
3 years ago
0
Sharded flag not respected when calculating contig coverage
#66
donovan-h-parks
opened
3 years ago
1
--bam-files incompatible with --min-read-*-pair
#65
simone-pignotti
closed
1 year ago
5
Extract unmapped reads
#62
jsgounot
closed
3 years ago
3
adding logo
#61
rhysnewell
closed
3 years ago
2
unmapped reads of abundance output and mapped reads of `samtools flagstat` is quite different
#60
juyanmei
closed
3 years ago
4
Mapping errors on a cluster
#59
r0sies
closed
3 years ago
10
minimap2 doesn't croak when unequal numbers of reads are in fwd and rev files
#58
wwood
closed
3 years ago
0
build(deps): update rust-htslib requirement from 0.35.* to 0.36.*
#57
dependabot-preview[bot]
closed
3 years ago
1
Does CoverM only map one read from paired-read files?
#56
susheelbhanu
closed
3 years ago
4
alignment length
#55
chenyj8
closed
3 years ago
1
allowable characters in the genome fasta ID?
#54
mcmahon-uw
closed
3 years ago
2
failed to create temporary file
#53
jiee1993
closed
3 years ago
2
Request: Foreign function interface
#52
jakobnissen
opened
3 years ago
4
build(deps): update rand requirement from 0.7.* to 0.8.*
#51
dependabot-preview[bot]
closed
3 years ago
1
Set galah/dereplication as a crate feature
#50
apcamargo
closed
3 years ago
4
Failed to parse genome paths (even though the files are there)
#49
mcmahon-uw
closed
3 years ago
6
output
#48
MagdiJMayr
closed
3 years ago
0
export the results to output file
#47
chenyj8
closed
3 years ago
1
the rationale of genome coverage calculation
#46
chenyj8
closed
3 years ago
4
Error message: thread 'main' panicked at 'Unable to parse version for dashing (error 1)', /root/.cargo/registry/src/github.com-1ecc6299db9ec823/bird_tool_utils-0.2.0/src/external_command_checker.rs:98:14
#45
gecko1990
closed
3 years ago
5
build(deps): update rust-htslib requirement from 0.32.* to 0.35.*
#44
dependabot-preview[bot]
closed
3 years ago
1
build(deps): update env_logger requirement from 0.7.* to 0.8.*
#43
dependabot-preview[bot]
closed
3 years ago
1
build(deps): update nix requirement from 0.18.* to 0.19.*
#42
dependabot-preview[bot]
closed
3 years ago
1
change tmp path
#41
ShangjinTan
closed
3 years ago
3
coverm filter
#40
473021677
closed
3 years ago
6
Failed to correctly find or parse BAM file when submitting into a PBS cluster system
#39
6x16
closed
3 years ago
2
ERROR coverm::bam_generator
#38
DDavila10
closed
4 years ago
20
build(deps): update nix requirement from 0.17.* to 0.18.*
#37
dependabot-preview[bot]
closed
4 years ago
1
build(deps): update rust-htslib requirement from 0.30.* to 0.31.*
#36
dependabot-preview[bot]
closed
4 years ago
1
build(deps): update bio requirement from 0.30.* to 0.31.*
#35
dependabot-preview[bot]
closed
4 years ago
1
TAD (truncated average depth) and Trimmed mean depth
#34
jianshu93
closed
4 years ago
1
OSX: Default minimap2 method error
#33
jianshu93
closed
4 years ago
6
Add support for URMAP
#32
jianshu93
closed
4 years ago
2
Compile from source on MacOS failed
#31
jianshu93
closed
4 years ago
3
add output file option
#30
michoug
closed
4 years ago
1
a question about building
#29
Andy320
closed
4 years ago
3
build(deps): update rust-htslib requirement from 0.26.* to 0.30.*
#28
dependabot-preview[bot]
closed
4 years ago
2
Format code using 'cargo fmt'
#27
Atul9
closed
4 years ago
3
Warn user if it inputs an unsorted BAM file
#26
apcamargo
closed
4 years ago
3
options for linkage information or mapped reads?
#25
jvollme
opened
4 years ago
2
Updated to rust_htslib 0.29 and Updated Dereplicate function
#24
rhysnewell
closed
4 years ago
6
build(deps): update rust-htslib requirement from 0.26.* to 0.29.*
#23
dependabot-preview[bot]
closed
4 years ago
1
[Suggestion] Add TPM as a method for calculating coverage
#22
apcamargo
closed
4 years ago
2
Running multiple methods with one command
#21
elizabethmcd
closed
4 years ago
2
-m metabat fails with --no-zeros
#20
wwood
opened
4 years ago
0
CoverM and jgi_summarize_bam_contig_depths give different outputs
#19
apcamargo
closed
4 years ago
4
Relative abundance estimates double when using --genome-definitions and provided bam file
#18
caity-s
closed
4 years ago
6
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