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wwood
/
CoverM
Read coverage calculator for metagenomics
GNU General Public License v3.0
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bwa index not found with -r
#112
blindner6
closed
2 years ago
14
Details about the --reference parameter
#111
gallardoalba
closed
2 years ago
4
build(deps): update bio requirement from 0.39.0 to 0.41.0
#110
dependabot[bot]
closed
2 years ago
1
no issue any more
#109
liangjinsong
closed
2 years ago
0
ERROR coverm::genomes_and_contigs he contig 'k141_142388_length_1308_cov_6.0000' has been assigned to multiple genomes, at least 'JL17_bin.20' and 'WA23_bin.33'
#108
ZongzhiWu
opened
2 years ago
1
build(deps): update bio requirement from 0.39.0 to 0.40.0
#107
dependabot[bot]
closed
2 years ago
1
multi-threading CoverM coverage estimation via data parallelism library rayon
#106
jianshu93
opened
2 years ago
7
Abundance calculation about genome
#105
maocheng2020
closed
2 years ago
2
operational failures
#104
maocheng2020
closed
1 year ago
5
the sum of relative abundances less than 100
#103
WJunHao
closed
1 year ago
1
build(deps): update bio requirement from 0.38.0 to 0.39.1
#102
dependabot[bot]
closed
2 years ago
1
Use contig length for calculations, or contig length minus 150?
#101
jeffkimbrel
opened
2 years ago
0
build(deps): update clap requirement from 2.* to 3.*
#100
dependabot[bot]
closed
2 years ago
1
build(deps): update roff requirement from 0.1.* to 0.2.*
#99
dependabot[bot]
closed
2 years ago
1
large scale derelication
#98
jianshu93
closed
2 years ago
0
Which depth mectric would be best to use when reintroducing sample divisions to a metagenomic assembly?
#97
Rob-murphys
closed
1 year ago
1
BAM file only input resulting in 0 reads mapped?
#96
Rob-murphys
closed
2 years ago
1
Some questions about coverage calculation
#95
MengzhiJ
closed
2 years ago
2
Competitive vs non-competitive mapping
#94
mcmahon-uw
opened
2 years ago
0
Supplementary mappings in BAM file
#93
donovan-h-parks
closed
1 year ago
1
build(deps): update bio requirement from 0.38.0 to 0.39.0
#92
dependabot[bot]
closed
2 years ago
1
build(deps): update nix requirement from 0.22.* to 0.23.*
#91
dependabot[bot]
closed
2 years ago
1
build(deps): update version-compare requirement from 0.0.12 to 0.0.13
#90
dependabot[bot]
closed
2 years ago
1
samtools sort fail cannot allocate memory
#89
jianshu93
closed
2 years ago
4
The version of coverm
#88
dangchenyuan
closed
2 years ago
2
build(deps): update version-compare requirement from 0.0.11 to 0.0.12
#87
dependabot[bot]
closed
2 years ago
1
No found reference sequences when headers look the same
#86
shafferm
closed
2 years ago
7
Installation instructions unusable for HPC clusters
#85
samfux84
closed
2 years ago
2
How to specify filename formula for CoverM contigs?
#84
jolespin
closed
1 year ago
1
build(deps): update bio requirement from 0.34.0 to 0.37.0
#83
dependabot[bot]
closed
2 years ago
1
build(deps): update rust-htslib requirement from 0.36.* to 0.38.*
#82
dependabot[bot]
closed
2 years ago
1
build(deps): update nix requirement from 0.20.* to 0.22.*
#81
dependabot[bot]
closed
2 years ago
1
build(deps): update env_logger requirement from 0.8.* to 0.9.*
#80
dependabot[bot]
closed
2 years ago
1
compare genome across samples
#79
chenyj8
closed
2 years ago
3
Error when running coverM (genome mode): thread 'main' panicked at 'called `Option::unwrap()` on a `None` value'
#78
zehanna
closed
2 years ago
2
I am having issues installing coverM via conda and rust
#77
lcamVz
closed
2 years ago
8
blast like output for plotting-coverm filter
#76
jianshu93
opened
2 years ago
0
Meaning of the totalAvgDepth column in the metabat method
#75
CK7
opened
3 years ago
1
Failed to correctly find or parse BAM file
#74
kjvilardi
closed
1 year ago
5
build(deps): update nix requirement from 0.20.* to 0.21.*
#73
dependabot[bot]
closed
2 years ago
1
bwa-mem2 support to improve mapping speed
#72
jianshu93
closed
3 years ago
1
Recruitment plot for CoverM
#71
jianshu93
opened
3 years ago
0
Set --min-covered-fraction when calculating contig coverage using 'coverm contig',
#70
ZongzhiWu
closed
1 year ago
1
Naive question: reads mapping to multiple locations
#69
ntromas
opened
3 years ago
0
Option to produce percent identity summary
#68
edgraham
opened
3 years ago
1
Upgrade to GitHub-native Dependabot
#67
dependabot-preview[bot]
closed
3 years ago
0
Sharded flag not respected when calculating contig coverage
#66
donovan-h-parks
opened
3 years ago
1
--bam-files incompatible with --min-read-*-pair
#65
simone-pignotti
closed
1 year ago
5
Extract unmapped reads
#62
jsgounot
closed
3 years ago
3
adding logo
#61
rhysnewell
closed
3 years ago
2
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