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xavierdidelot
/
BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
https://xavierdidelot.github.io/BactDating
MIT License
80
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estimated substitution rate - no temporal data
#20
clydeandforth
closed
4 years ago
3
How to set evolutionary clock
#19
maesaar
closed
4 years ago
3
Strength of temporal signal!
#18
nbawe
closed
4 years ago
9
res$tree$root.time different from root date in print(res)
#17
fengyuchengdu
closed
4 years ago
3
Take population structure into account in temporal signal assessment?
#16
flashton2003
closed
4 years ago
9
Question about random permutation
#15
flashton2003
closed
4 years ago
2
bactdating is not compatible with R 3.6.0
#14
happykhan
closed
5 years ago
1
Adds drop.tip.useRec for trees with rec information
#13
johnlees
closed
5 years ago
5
drop.tip with loadGubbins or similar
#12
johnlees
closed
5 years ago
1
one more silly question
#11
fengyuchengdu
closed
5 years ago
2
Fix for trees with 3-way polytomy at the root now correctly read as u…
#10
xavierdidelot
closed
5 years ago
0
export final tree with CI intervals
#9
fengyuchengdu
closed
5 years ago
6
added as.treedata
#8
xavierdidelot
closed
5 years ago
0
Dev
#7
xavierdidelot
closed
5 years ago
0
ML tree to coalescent tree
#6
mushalallam
closed
5 years ago
1
Error with 0 branch lengths
#5
rgladstone
closed
5 years ago
3
Fix for hashes in sample names, and readGubbins file names
#4
johnlees
closed
5 years ago
2
bug in loadGubbins function?
#3
amilesj
closed
6 years ago
1
Consider STAN as an MCMC engine
#2
andersgs
closed
5 years ago
3
Update simulate.R
#1
maxbiostat
closed
6 years ago
2
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