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xavierdidelot
/
BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
https://xavierdidelot.github.io/BactDating
MIT License
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Error in if (log(runif(1)) < l2 - l + dgamma(mu2, shape = 0.001, scale = 1000, : missing value where TRUE/FALSE needed
#70
MaryRFALIGNIR
closed
2 weeks ago
5
Question–– model selection with pstrict vs. other criteria?
#69
amyecampbell
closed
3 months ago
2
Export BactDating object to SPREAD
#68
Leytoncito
opened
7 months ago
0
Error in if (log(runif(1)) < l2 - l + dgamma(mu2, shape = 0.001, scale = 1000, : missing value where TRUE/FALSE needed
#67
varunshamanna
closed
8 months ago
1
Uncertain error message
#66
MaitiuMarm
closed
10 months ago
2
Error to BactDating
#65
STChoudhury
closed
11 months ago
3
Question: BactDating usage (one gene)!
#64
maesaar
closed
1 year ago
1
the node data on exported plot
#63
chaolv123
closed
1 year ago
1
Error in if (log(runif(1)) < l2 - l + dgamma(mu2, shape = 0.001, scale = 1000, : missing value where TRUE/FALSE needed
#62
appliedmicrobiologyresearch
closed
1 year ago
8
Possible for parallel running?
#61
Tonny-zhou
closed
1 year ago
1
Error when specifying isolation date intervals
#60
acrespo-virevol
closed
2 years ago
1
plotting 95CI for MCMC analysis
#59
drxilu
closed
2 years ago
1
t$unrec values are negative or larger than 1
#58
drxilu
closed
2 years ago
2
Bacdating not installed on R
#57
krishna1925
closed
2 years ago
1
Is it possibile for providing the outgroup taxa to root the tree?
#56
Tonny-zhou
closed
2 years ago
3
#Acquire the estimated time for each node and add time axis when plotting the result tree
#55
QianGuoPKU
closed
2 years ago
1
Extract isolation dates from tip labels
#54
amymariecampbell
closed
2 years ago
1
ESS values when nbIts increase
#53
snakano0527
closed
2 years ago
4
Title : Error with bactdate : Error in if [...] missing value where TRUE/FALSE needed
#52
fredericQC
closed
2 years ago
7
effectiveSize function from coda package cannot read object from
#51
hcc14
closed
2 years ago
1
Help on interpreting results - strenght of temporal signal
#50
andreaniml
closed
2 years ago
5
calculation of mutation rate and DIC value
#49
LeonardosMageiros
closed
2 years ago
3
Bactdating convergence and root to tip plot
#48
LeonardosMageiros
closed
2 years ago
2
Missing dates
#47
LeonardosMageiros
closed
2 years ago
2
Question about the strength of signal requirements.
#46
martinastoycheva
closed
3 years ago
1
incompatible dimensions
#45
jts1044
closed
3 years ago
1
questions on interpreting results
#44
fengyuchengdu
closed
3 years ago
1
Invariant sites for snp tree?
#43
Tonny-zhou
closed
3 years ago
3
Incorrect dimensions
#42
furqan915
closed
3 years ago
1
Sigma value 501.000 on multiple runs on same dataset!
#41
maesaar
closed
3 years ago
12
Model Comparison
#40
dnanto
closed
3 years ago
3
mixedgamma vs mixedcarc model
#39
maesaar
closed
3 years ago
12
branch/subtree statistics
#38
fengyuchengdu
closed
3 years ago
1
Please Host BactDating on the Anaconda R Channel
#37
dnanto
closed
4 years ago
3
seems like the as.mcmc function behaves differently between R versions
#36
fengyuchengdu
closed
3 years ago
3
Extracting node height and CI
#35
GonzaloYebra
closed
4 years ago
4
Can BactDating run on R3.6.1?
#34
StephanieWLo
closed
4 years ago
3
Help wanted: how to inerpret mu?
#33
nbawe
closed
4 years ago
4
Root-to-tip R2 value?
#32
nbawe
closed
4 years ago
4
How to export BactDating tree to newick?
#31
maesaar
closed
4 years ago
2
export to figtree
#30
fengyuchengdu
closed
4 years ago
7
95%CI association with tip and node labels?
#29
maesaar
closed
4 years ago
2
error after updating to 1.0.9
#28
fengyuchengdu
closed
4 years ago
5
Error in if (log(runif(1)) < l2 - l + pratio + qratio) { : missing value where TRUE/FALSE needed
#27
nbawe
closed
4 years ago
7
Posterior support values of the result tree?
#26
Tonny-zhou
closed
4 years ago
2
pstrict value explanation!
#25
nbawe
closed
4 years ago
4
Is it possible to combine different date formats?
#24
maesaar
closed
4 years ago
7
Rooted and unrooted trees in BactDating analysis!
#23
nbawe
closed
4 years ago
11
Write result tree to nexus
#22
ConstantinV
closed
4 years ago
2
export bactdating object to tree
#21
clydeandforth
closed
4 years ago
2
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