zavolanlab scRNAsim-toolz issues

zavolanlab / scRNAsim-toolz

A repository for the tools used by scRNAsim.

MIT License

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feat: Specify distributions that will be used for modelling transcription, fragmentation and sampling of reads.

#29 magmir71 opened 8 months ago
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Update readmes

#28 balajtimate closed 8 months ago
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test: #7 read sequencer

#27 ninsch3000 opened 8 months ago
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test: #6 fragment selector

#26 ninsch3000 opened 8 months ago
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test: #5 cDNA generator

#25 ninsch3000 opened 8 months ago
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test: #4 priming site predictor

#24 ninsch3000 opened 8 months ago
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test: #3 sequence extractor

#23 ninsch3000 opened 8 months ago
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test: #2 structure generator

#22 ninsch3000 opened 8 months ago
1
test: #1 transcript sampler

#21 ninsch3000 opened 8 months ago
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feat: priming-site-predictor energy threshold value

#20 balajtimate opened 8 months ago
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Fix: cdna-generator input and fragment-selector output

#19 balajtimate closed 8 months ago
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fix: structure-generator takes regions other than exons into account

#18 balajtimate opened 8 months ago
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fix: fragment-selector output is not a fasta file

#17 balajtimate closed 8 months ago
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fix: cdna-generator extract info based on headers

#16 balajtimate closed 8 months ago
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fix: transcript sampler

#15 balajtimate closed 8 months ago
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fix: transcript sampler outputs non-matching representative transcripts

#14 balajtimate closed 8 months ago
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Remove gtf header

#13 balajtimate closed 8 months ago
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feat: update dockerfile

#12 balajtimate closed 8 months ago
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refactor: remove cli_test_helpers

#11 balajtimate opened 8 months ago
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feat: add Dockerfile

#10 balajtimate closed 8 months ago
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test docker ci

#9 balajtimate closed 8 months ago
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feat: add docker publish to ci

#8 balajtimate closed 8 months ago
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fix: do not write header for gtf file

#7 ninsch3000 closed 8 months ago
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feat: Dockerfile

#6 ninsch3000 closed 8 months ago
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bug: structure-generator does not output valid gtf

#5 ninsch3000 closed 8 months ago
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fix: update psp indexing

#4 balajtimate closed 8 months ago
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feat: update requirements

#3 balajtimate closed 8 months ago
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refactor: update setup.py

#2 balajtimate closed 8 months ago
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feat: add ci, versioning

#1 balajtimate closed 9 months ago
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