zhoulab p53-chip-seq-data issues

zhoulab / p53-chip-seq-data

Basic machine learning on genomic data

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New dataset based on MAST matches

#29 victorlin opened 5 years ago
4
Explore using SVC-RFE rankings

#28 victorlin opened 6 years ago
0
Master table sample column values

#27 victorlin closed 5 years ago
0
Update script for new MAST files

#26 victorlin closed 5 years ago
4
Master table for mammalian datasets

#25 varsh1090 opened 6 years ago
1
Add maxMACS and maxFE columns in master table

#24 victorlin closed 6 years ago
0
Create tests to validate results

#23 victorlin opened 6 years ago
0
Incorrect sample counts in master table

#22 victorlin closed 6 years ago
0
Generate train/test split in preprocessing script

#21 victorlin closed 6 years ago
0
Move conservation score column

#20 victorlin closed 6 years ago
0
Remove header in concat_sample_beds.R

#19 victorlin closed 6 years ago
1
Generating non-binding intervals

#18 victorlin closed 6 years ago
2
Be able to subset data file

#17 victorlin closed 6 years ago
1
Catch errors when piping in Makefile

#16 victorlin opened 6 years ago
1
Binding prediction data preprocessing

#15 victorlin closed 5 years ago
1
Area venn diagram

#14 varsh1090 closed 6 years ago
10
Create main data file

#13 victorlin opened 6 years ago
0
User input for samples to use in Master tables

#12 varsh1090 closed 7 years ago
4
Re-pivot master table

#11 victorlin closed 6 years ago
5
Add anno subsection repeat type as a column

#10 varsh1090 closed 7 years ago
0
User input for mast file

#9 varsh1090 closed 6 years ago
2
Melt current master table format

#8 victorlin closed 7 years ago
3
Sample count column - distinct samples per peak

#7 varsh1090 closed 7 years ago
0
Cell and treatment type comparisons

#6 varsh1090 closed 7 years ago
1
Stacked plot using merged peak annotations

#5 varsh1090 opened 7 years ago
0
Statistical test for Rep vs Non-rep

#4 varsh1090 closed 7 years ago
1
Take repeat proportion intervals for plot_chr_vs_macs

#3 victorlin closed 7 years ago
4
Create script to generate all plots

#2 victorlin closed 6 years ago
0
Incorrect annotation and gene name in master table

#1 victorlin closed 7 years ago
0