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Hello everyone,
I've tried using the config.16s.yaml with the test data it works fine. However, when I try running a dry run using my own data it prompts me this error.
You will not be able to…
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Should expand these terms to enable reporting of the recovery of other taxonomic marker genes, not just 16S?
## Current term details of 16S recovered [[MIXS:0000065](https://genomicsstandardsconsor…
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Hi, I am trying out Ampligone. It works fast but I got a few questions. I am working with Nanopore reads of 16s rRNA amplicons.
1) If you provide the tool with a single reference, than it determine…
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I have a k2report file for which i have run bracken for abundance estimation. when i run the bracken i get the below error
$ bracken -d /mnt/e/krakenindexdb/16S_Silva138_20200326/16S_SILVA138_k2d…
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My name is Jemima and I recently started a PhD working on stool and vaginal samples from a clinical trial in SSA. I am currently working on sequencing the full 16s gene on nanopore platform. I have s…
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Hi there,
I have two questions:
1. You have mentioned that "ONTbarcoder has been optimized for protein coding gene like COI. While **there are ways** to obtain consensus for length variable non …
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### Description of feature
As one of the input database files (silva_species_assignment_v138.1.fa.gz) stores an information about the 16S gene primary accession in GenBank database, I'm looking for t…
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### Contact details
laura.lardinois@mail.mcgill.ca
### Dataset Title
Fish Microbiome 16S 2021-22
### Describe your dataset and any specific challenges or blockers you have or anticipate.
I have s…
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- title: '16S: A comprehensive dataset on spatiotemporal variation of microbial plankton
communities in the Baltic Sea'
- GBIF: https://www.gbif.org/dataset/4e15ad17-be62-4101-8cc2-9f315e27f1dc
- …
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:bug:
Hello, I ran the theiaproke workflow on my local computer (macOS, M3) using miniwdl. I faced with the aborting workflow when running task: shovill_pe.
the run command is `miniwdl run $HOME/t…