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Here is the error
```
> ps_obj #Data quality control
> library(metacoder)
> obj$data$otu_counts
> print(obj)
1186 taxa: aab. Bacteria, aac. Bacteroidota ... cjf. uncultured_delta, cjl. un…
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Make alpha-diversity
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Hello and thanks for the awesome tool.
I have a question, I see you efficiently introduced a method to plot and represent beta-diversity between samples (dissimiliarities).
I was thinking, what …
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Hi everyone !
Just a simple question : Does the alpha diversity simpson on phyloseq is the gini-simpson ?
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Hello!
While reading several papers about microbiome analysis, I have found a regular recommendation for normalization prior to analyses. But this sounds strange to me for alpha diversity, since es…
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Hi team
This is a powerful package and your up-to-date tutorial is very helpful.
I was wondering if you could help with the downstream analysis for functional diversity? https://github.com/gavinm…
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Great tool, could you provide a bit of background for J alpha diversity measurement? I have look online and I could not find anything about it.
Thanks :))
Jesus
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Hi, thanks for building and maintaining this fantastic package.
I am wanting to use the DESeq2 method in your trans_diff function but come across the following error:
` t1 293 input features ..…
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The verbiage like “compute” and “Evolutionary breadth” is very technical sounding and can be simplified. Also reduce the number of times that “compute” is used.
No one understands the chart. Can t…
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This module makes use of `stderr.write` and `exit` for cases where exceptions are raised, see for example [line 314](https://github.com/qiime/qiime/blob/master/qiime/alpha_diversity.py#L314), [line 32…