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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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Hello,
I built a custom bacterial database following the instructions from the kraken2 manual on github (https://github.com/DerrickWood/kraken2/blob/master/docs/MANUAL.markdown). This went successf…
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Hi,
I have created viral database and when aligned my samples using Blastx only one subject is showing and it is bacteria. I have aligned more than 30 samples but only can see one subject id (WP_0159…
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Hi there, when i use SMTa for microbe analysis in visium data, i noticed that the nt database is too large and time consuming.
, but I have yet to find it formatte…
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Hi there! I'm attempting to perform a homology search for a single gene (a bacterial protein) across all sequenced bacterial genomes to estimate the % of species that carry the gene. Is there a way to…
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Hello, I have encountered some tricky problems.
1. I can't download your kmer database from Google drive in the HPC cluster under terminal. Although I tried several google drive command line download…
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