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The data in this GCP is not eligible for inclusion in the GWAS Catalog because it relates to a bacterial (not human) GWAS.
The GCP and its submission need to be deleted.
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Several loose comments in the thread below. I'll keep editing this top comment to keep track of ideas.
- [ ] Create an appendix of common species (e.g. based on participants in the course) and what…
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Hello,
I want to use treeWAS for Bacterial GWAS, and my data is in the form of SNPs and gene presence /absence, but when I run the program I get the (Error in tree.reconstruct(genotype, method = …
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From Elissa: [In the Phenome Database], you can see some potential mapping, e.g. measurement 1501 has "altered susceptibility to bacterial infection" phenotype (MP) and "response to bacterial infectio…
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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Hi, I already applied Pyseer on the SNP level. I wondered if applying Pyseer on k-mers for my dataset will provide me with new information? If so which kind of information?
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Hi, I am trying to run unitig-caller in a HPC to be used in a GWAS with pyseer.
Every time I try to use it the process is killed since the it runs out of memory. I have tried with up to 512GB RAM, a…
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Hi, I'm looking towards using your program for bacterial GWAS for multiple phenotypes.
I was wondering if you had some advice regarding the choice of reference strains (for both associations and anno…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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Hello,
I tried running Hawk, but I got stuck when running the `runHawk` script. I reran the `runHawk` script with the `-eux` bash flags (`bash -eux ./runHawk`) in order to check what is happening i…