-
Creation of standards by which bioinformatics resources can be systematically assessed plus a review process defining the assessment criteria and procedure
-
Hi all,
We are trying to get this pipeline working with the included control dataset so we can use it to characterize a variety of novel bacteriophages that we think may be circularly permuted with…
-
- [x] Pema (ARMS)
- [x] QZIP (AWI)
- [x] Tourmaline (NOAA)
- [x] Banzai (MBON)
- [x] ANACAPA (UCLA)
- [x] SLIM (University of Geneva)
- [x] CASCABEL (NIOZ)
- [x] ABYSS (Ifremer)
- [x] MgNIFY (…
-
Hi Dr.Camargo:
I find this nice project when I read your IMG/VR v4 manuscripts published on Nucleic Acids Research. I have some doubts about this and hope you can help me about them.
1.I tried this…
-
Would be useful to see pipeline examples in a bioinformatics context.
- Tophat on samples
- Index bams
- Run RSEM on each
- Merge outputs together in a matrix (CPM, TPM, FPKM)
- Run RNAQC on combined …
-
- [ ] https://github.com/biocompute-objects/portal_userdb/issues/358
- [ ] https://github.com/biocompute-objects/portal_userdb/issues/360
- [ ] https://github.com/biocompute-objects/portal_userdb/issu…
-
https://gdc.cancer.gov/about-data/gdc-data-processing
-
This is so cool, and makes it possible for citizen scientists to run their own bioinformatics (without access to clusters!)
Could you show a couple of examples of running a vanilla hello world Next…
-
and similar terms, e.g. computational/ biomedical pipelines,
e.g. as per https://www.wikidata.org/w/index.php?title=Special:Search&limit=500&offset=0&profile=default&search=bioinformatics+pipeline
-
In ["Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, `10.1093/molbev/msad207`](h…