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This is now available at https://stars.renci.org/var/babel_outputs/2024aug18/reports/duckdb/identically_labeled_cliques.tsv.gz -- note that column 3 is the files that these clique leaders come from, w…
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https://kgx.readthedocs.io/en/latest/
It's possible that everything we'd need to support this is already in place (ie networkx graph output) but maybe it'd be nice to document it.
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Here's a short list of curies that have identical preferred names but don't get combined. A couple are discordant in biolink category.
```
DOID:10017 multiple endocrine neoplasia type 1 biolink:Di…
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I think it would be nice to have a `theme_monarch` function that gives plots some useful attributes.
Relates to #24.
# 1.
- [ ] Provide consistent colors for categories, predicates, etc. Atm the…
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Currently, the `response` inputs to ARAX ranker in [ARAX_query.py](https://github.com/RTXteam/RTX/blob/d37f15a73bfb8fea1826634d23254b787cc9445e/code/ARAX/ARAXQuery/ARAX_query.py#L856) contain "virtual…
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#### Describe the problem
TRAPI queries for drug-target predictions do not return any results. Tested and reproducible in dev and all ITRB environments. Using the example query suggested in the doc…
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Given the following query:
```json
{
"message": {
"query_graph": {
"edges": {
"t_edge": {
"knowledge_type": "inferred",
"object": "ON",
"pred…
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The failure of the CI run for [55e2c16](https://github.com/RTXteam/RTX-KG2/commit/55e2c1637714cb8643c4ea4a22dba6b3ee2a4746) suggests that the predicate mappings are not up-to-date with Biolink v4.2.0:…
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we noticed that the SRI node normalizer appears to miss merging `CHEMBL.COMPOUND:CHEMBL1201522` with the `MESH:D013668` clique, though as far as we can tell those concepts are equivalent.
https://…
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so the Plover build for KG2.10.0c is spitting out the warning `WARNING: Provided predicate(s) {'biolink:drug_regulatory_status_world_wide'} do not exist in Biolink 4.2.0`
looking into that, I can s…