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Hi there,
Thank you for your helpful plugin on gene annotation！
I recently annotated my fine-mapping variants using VEP and the CADD plugin, with a list of rsIDs as the input file. Here’s the co…
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I am wondering if you can explain/look into how CADD scores are normalized to have a scale from 0-1 when used as a pathogenicity predictor. I have noticed that when I combine CADD with other tools, CA…
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Hi there ,
regarding the new version of CADD v1.7 installation on docker, i have faced a problem " The following environment variables are requested by the workflow but undefined. Please make sure…
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I am getting the following error while running the test script for CADD 1.7:
```
$ ./CADD.sh -a -g GRCh38 -o ~/tmp/cadd/output_inclAnno_GRCh37.tsv.gz ./test/input.vcf
CADD-v1.7 (c) University of …
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Cadd version 1.7 has been [released](https://github.com/kircherlab/CADD-scripts/tree/v1.7). Among other update the scoring now also uses information from protein language models. See paper [here](http…
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It would be nice to include indels with CADD scores in the gemini annotation pipeline.
http://krishna.gs.washington.edu/download/CADD/v1.3/InDels.tsv.gz
```
zcat InDels.tsv.gz | head
## CADD v…
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(discussed with @mboudet today)
There are a few flaws that need to be adressed in the CI process (as implemented in `https://github.com/BioContainers/ci/blob/master/github-ci/src/biocontainersci/biot…
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Hi!
Our analysis and the design of Scout, for historical reasons, heavily rely on CADD. However, there are now several new in silico prediction tools available. The advantage of CADD is that …
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**Is your feature request related to a problem? Please describe.**
At the current compression, the rocksdb for CADD clocks in at 426GB. The bgzip-ed TSV files only have 252GB. This is clearly too…
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I just tried to install CADD locally. It fails during the creation of the environments.
```bash
snakemake test/input.tsv.gz --use-conda --conda-create-envs-only --conda-prefix envs/conda \
…
boesr updated
3 months ago