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Hello,
Thanks very much for this tool! Are you planning to add a model for R10 cDNA any time soon? I suspect that it would get a lot of use.
Thanks,
John
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Hello,
Can the same pipeline be used for cDNA sequencing as well?
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Hi dear DROP team !
We are exploring possibilities to get into aberrant splicing analysis using long read RNA/cDNA sequencing from Nanopore sequencers.
Do you think it is achievable to use the D…
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Hi, we have sequenced 5 samples' scRNA-seq in your company and when I got the data, I found that there are multiple directories under each sample and for each sub-directory, there are also two pairs o…
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Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
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Hello,
I have leukemia samples sequenced by cDNA-ONT, I would like to know if it is possible to run ALLsorts to predict ALL subtypte. Have you ever tried it?
Thank you,
Maria Sol
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**User story**
As a member of the SSR team, who has received a plate from faculty containing cDNA, I would like to be able to import them into Sequencescape along with all the required data.
**Who…
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Hi Zhenyu,
I noticed in the script S02.umi.process.one.sh, you used minimap2 for mapping to the reference genome and then used salmon for quantification. Additionally, it seems that for the referen…
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Thank you for sharing your code and data :)
However, I encountered an issue while examining the cDNA data. I noticed that several PDB entries, which provide corresponding MSAs and FASTA files, are n…