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subtask from:
https://github.com/pombase/pombase-chado/issues/720
https://github.com/pombase/website/issues/2058
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### Pull Request #88
Currently the way I am working to upgrade KnowPulse to Tripal 4 involves
1. create a fresh Tripal 4 site, but use a name for your chado schema that is different than your …
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Hi
I've just discovered these new scripts for chado (from https://github.com/bioconda/bioconda-recipes/pull/10465), it's great!
Since a few months we've worked on another python module named [python…
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as per #200 we want to use the chado API for all queries. this means any `db_select()` statements should be redone.
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# Django models for Chado - Daniel E. Cook
[https://www.danielecook.com/django-models-for-chado/](https://www.danielecook.com/django-models-for-chado/)
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Since we still get new additions into the chado_checks.duplicate_allele_descriptions log
https://curation.pombase.org/dumps/latest_build/logs/log.2024-06-25-21-01-00.chado_checks.duplicate_allel…
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Once
https://github.com/pombase/pombase-chado/issues/1195
done, compare
signalP (
Phobius (could use the InterPRoAPI for this)
DeepSig?
and decide thresholds to use to get best coverage. …
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Sudhansu has suggested that we create a standard for the chado_uniquename.
This will be a discussion on uniqueness of name, name creation and matching. Currently, the genemodel ids from field 9 …
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### Tripal Version
4.x
### Drupal Version
any
### PostgreSQL Version
any
### PHP Version
any
### General Description
I am transferring Bug 2 from issue #1913 to here, becaus…
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PR https://github.com/tripal/t4d8/pull/297 adds support for efficient use of chado in automated testing as well as confirms the official prepare task works in the automated testing environment.
We …