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### Lung-specific gene expression
- Identify the expression pattern for the marker genes of tissue-resident T cells
- [ ] integrate chromatin profiles with expression to validate the utility of …
j3gu updated
11 months ago
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editor preferred term: single-nuclei ATAC-seq
alternate terms: snATAC-seq
textual definition: Analysis of the transposase-accessible-chromatin in single nuclei isolated from frozen tissue samples th…
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### Lung-specific gene expression
- Identify the expression pattern for the marker genes of tissue-resident T cells
- [ ] integrate chromatin profiles with expression to validate the utility of …
j3gu updated
10 months ago
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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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Hi,
Could you provide the python script to produce Xreducedall.2002.npy file, pls?
Maybe we can use the pipeline for another organisms analysis, such as FLY. Thansk in advance!!!
Best Wishes,
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Hi, I got the following error when creating the wheat genome index
```
Build index for the reference.
Kmer length: 17, window size: 7
Reference file: 161010_Chinese_Spring_v1.0_pseudomolecules.f…
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Hi, I was trying to predict the chromatin profiles by running `sh 1_sequence_prediction.sh $input_filepath $genome_version $outdir --cuda` but got the following errors. Can anyone helps for this? Than…
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Source: GEO
```yaml
label: GSE70770
title: Prostate cancer stratification using molecular profiles
accession: GSE70770
year: 2015
pubmed_id: [26501111, 26950096]
doi: 10.1016/j.ebiom.2015.07…
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Hi CHESS,
First of all, thanks so much for letting the users updated about this beautiful software! Like many, I was also recently trying to use CHESS to analyze Hi-C data that our lab has generate…
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Hi !
I am trying tu use msCENTIPEDE to generate TF footprints for several ATAC-seq data sets i've produced.
I wanted to have general advices on how to achieve the most accurate workflow.
So far, w…