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Hi Juliana, Thank you for sharing your genetic QC pipeline—it has been incredibly helpful. I have a question regarding whole-genome sequencing (WGS) data. Due to its large size, it's often to separate…
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### In which category is your new term request?
- [X] new_definition
- [ ] existing_definition
### Preferred term label
Sex Chromosome
### Synonyms
Allosome
### Synonym type
None
### Textual d…
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I'm not sure if this kind of problem has been already reported, but I couldn't find any clues on how to solve it, so decided to write my question here.
I made a bunch of bigwig files using [bedGraphT…
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For diploid sex individuals:
Female: XX
Male: XY
In 1KG VCF files, Y will be in a separate file. The format of VCF file only has 1 entry per individual (e.g., 0, 1, -), and each XY individual wou…
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### In which category is your new term request?
- [ ] new_definition
- [X] existing_definition
### Preferred term label
chromosome
### Synonyms
_No response_
### Synonym type
None
### Textual …
ccaio updated
2 months ago
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Hello!
I'm Eugene, Your tool is very useful to me, I would like to express my gratitude. I have a little question. Is it possible to mirror chromosomes that are visualized using the commands full_ide…
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![Copia uno](https://github.com/user-attachments/files/17515302/Chromosome_XIII_featur…
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Hello @oushujun @FayeFang17 ,
Although the EDTA run completed successfully, I received the following error message and couldn’t find chromosome_density_plots.pdf. Is it possible to generate chromosom…
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In our initial use case, we have the comfort of a deterministic mapping between chromosomes and actual VCF files, i.e. `chr4` always exists only on a specific file named in a GREGoR data table.
I'm…
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We are now working on Nanoseq in a monkey. Human and mouse chromosomes usually start with N. But, in this monkey, some chromosomes start with ATGC. When sequence reads are mapped to the end of such ch…