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Hi Robbin,
I think you should take a look at tightening up some version requirements on DeepLC python dependency packages. Specifically, pygam, scipy, scikit-learn. Here's what I experienced:
On…
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Could the [DeepLC](https://www.nature.com/articles/s41592-021-01301-5) algorithm be implemented in DIA-NN software and improve modified peptide analysis?
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I'm getting an uncaught exception when trying to use ms2rescore.feature_generators.ms2pip.DeepLCFeatureGenerator. The error happens when there are not enough peptides in psm_list for the calibration s…
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Hi,
I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis
here is the log of ms2rescore in debug mode
```
Running DeepLC for PSMs from run (1/1): `5…
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> Hi, ralph
> Hope you are doing well,
>
> First, since I was testing your windows installation to make a protocol for a gui user, things like pip are not used.
>
> Now, I just tried reinstall…
RalfG updated
2 months ago
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**Describe the bug**
AlphaPept model is not available.
**To Reproduce**
```
(oktoberfest-env) tobiasko@fgcz-c-072:/scratch/cpanse/PXD028735/oktoberfest$ python -m oktoberfest --config_path spe…
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Dear developers,
I have used Oktoberfest to generate a Spectral Library from a .fasta file, however, there is no proteinID information in this Lib. I have checked the settings few times, still didn…
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Hello @RalfG,
First thanks very much for developing such wonderful tool, I really enjoyed working with it!
I have a question regarding how to apply MS2rescore to bruker (.d) or broadly speaking,…
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The description of hackathons could be more homogeneous. Even though the writing may closely derive from an abstract written by a different author/organizer, it should have a common section each time:…
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Could you add a table to the documentation that better summarises the available models? Something analogous to the MS2PIP model table: [https://github.com/compomics/ms2pip?tab=readme-ov-file#specializ…