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Hi ,
Thank you so much for the package. I'm wondering how to load .bw files and calculate coverage matrix for specified custom regions. I couldn't find this in the documentation. It would be really …
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Hi,
Currently in BioC release (3.16) and devel (3.17), `recount` is failing. That's because neither the new IDIES location nor AWS are allowing us to read the BigWig files from the web. I manually …
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Hi,
When I run the srnadiffExp() I got warning message as below:
```
.. 1141080 elements found...
... Annotation step done.
Constructing object...
... done.
Warning message:
In rcpp_normaliz…
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Hello ,
I just tried to use with my data PGA package and i had an error in dbCreator:
library(BSgenome.Hsapiens.UCSC.hg19)
dbfile
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Hi, thank you for developing this useful package.
I'm getting this error when trying to run peak finding step. It goes until chr3, then gives this error. I am not sure what causes this error in Bio…
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The RaggedExperiment [build report](https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/RaggedExperiment/) started to error across all platforms, maybe because of a change in magick? A repro…
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Hello,
Thank you for making this tool. I would like to use derfinder starting from a set of bam files. I have loaded the files using load coverage and it ran without problems:
lC
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Hi,
I'm having trouble importing remote BigWig files with `derfinder`, [which internally](https://github.com/lcolladotor/derfinder/blob/5c1cbd412c5787bf2d2d778977e38dd6ae64976d/R/loadCoverage.R#L40…
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Hi,
We ran `HISAT2` (2.0.4) on a 422 sample dataset against hg19, then against hg38. Then using `featureCounts` we built some count matrices and analyzed them for differential expression and got ve…
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## Description of the issue
The function _"recount::getTPM(rse)"_ returns the unexpected error message: _'Error: subscript contains invalid names'_.
Below, is a reproducible example that I have…