lawremi rtracklayer issues

lawremi / rtracklayer

R interface to genome annotation files and the UCSC genome browser

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issues

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Improved platform independence via curl_version_info()

#126 sanchit-saini opened 3 weeks ago
2
Improved platform independence via LSB for Ubuntu

#125 sanchit-saini closed 3 weeks ago
0
Fix CURLINFO_FILETIME_T not available in ubuntu 18.04

#124 js2264 opened 4 weeks ago
0
CURLINFO_FILETIME_T not available in ubuntu 18.04

#123 js2264 opened 1 month ago
8
library 'ssl' not found

#122 akhst7 opened 2 months ago
0
Remove login(), saveView() and restoreView()

#121 sanchit-saini closed 2 months ago
0
Add test cases to check if the UCSC scraping logic works properly

#120 sanchit-saini closed 1 month ago
0
Fix track(UCSCSession) to retrieve track by table Name

#119 sanchit-saini closed 2 months ago
0
Fix linking error on Windows/Rtools44

#118 hpages closed 2 months ago
1
Update build flags are generated by pkg-config

#117 sanchit-saini closed 4 weeks ago
0
Use curl::curl_unescape() instead of utils::URLdecode()

#116 hpages closed 3 months ago
2
Apply patch to fix compilation issue on ARM submitted by @kalibera

#115 sanchit-saini closed 2 months ago
0
Add pix=800 default to fix JS required issue

#114 sanchit-saini closed 3 months ago
1
UCSCSession objects breaking possibly because of some change on the UCSC side

#113 hpages closed 3 months ago
22
Migrate from RCurl to httr

#112 hpages closed 3 months ago
1
export file with a semi-colon at the end of each line

#111 hidtak opened 4 months ago
0
push -Wformat fix upstream Bioc

#110 LiNk-NY opened 4 months ago
1
Rewrite network stack in libcurl

#109 sanchit-saini closed 5 months ago
0
fix unknown track error in line665: rmsk --> RepeatMasker

#108 ferygood opened 5 months ago
0
Liftover convert hg38 to hg19

#107 JingjingBai2021 closed 5 months ago
1
Remove unused dead C code

#106 sanchit-saini closed 5 months ago
0
getTable() not working with hg38 UCSC session

#105 kkmarkel closed 7 months ago
2
restfulr can not process https

#104 qiyubio opened 7 months ago
3
Unknown track: refSeqComposite

#103 prc992 opened 7 months ago
2
Hello, I got an issue about Ucsc track, which is related to [#99 ](https://github.com/lawremi/rtracklayer/pull/99)

#102 jennyujin22 opened 7 months ago
1
libcurl function error when calling ucscGenomes()

#101 slsevilla opened 8 months ago
3
Change GRangesList to GRanges in browseGenome() to avoid error in normGenomeRange()

#100 sanchit-saini closed 8 months ago
0
Ucsc tracks

#99 sanchit-saini closed 8 months ago
0
ucscTables() does not work properly for hs1 genome

#98 hpages closed 8 months ago
6
Switch from HTTP to HTTPS for requests to *.ucsc.edu

#97 hpages closed 8 months ago
1
PR #79 breaks readGFF()

#96 hpages opened 8 months ago
0
Issues with browserSession()

#95 muqiaowhale closed 8 months ago
40
Fix '\item' tags with empty labels in .Rd files

#94 hpages closed 8 months ago
0
Update to handle UCSC genome names for hs1 & mpxvRivers

#93 sanchit-saini closed 8 months ago
2
Update url to prevent redirection for ucscTables

#92 sanchit-saini closed 9 months ago
0
Error in ucscTables("hg19", "Assembly") : Invalid genome :'hg19'

#91 sakuramodokich closed 9 months ago
1
Can't create a browser session for "hs1" or "mpxvRivers" genomes

#90 hpages closed 8 months ago
4
Update UCSC trackName selector

#89 sanchit-saini closed 10 months ago
3
trackNames() stopped working on a UCSCSession, possibly due to change on UCSC's side

#88 hpages closed 10 months ago
5
Request to Replace Sweave Vignettes with R Markdown

#87 sonali8434 opened 1 year ago
0
cannot load rtracklayer successfully

#86 lexie-lee opened 1 year ago
0
getTable ignores query ranges

#85 dorkylever closed 1 year ago
6
genome(session) <- "hs1" doesn't work

#84 hpages closed 8 months ago
2
Openssl is not available in netConnectHttps for importing remote BigWig files

#83 lcolladotor opened 1 year ago
7
Failing on Bioc devel

#82 bschilder opened 1 year ago
3
Add code to handle edge case while parsing JSON

#81 sanchit-saini closed 1 year ago
0
track query (track = "GC Percent", table = "gc5Base") problem

#80 DanielEWeeks closed 1 year ago
1
Explicitly use 'BiocGenerics::connection' to prevent warning message …

#79 svengato closed 8 months ago
10
Test failure on Windows due to multibyte character issue

#78 lawremi closed 1 year ago
2
`import.bb`: Error when `which=NULL`

#77 bschilder opened 1 year ago
0