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We use MmusDv for stages and we appreciate the ontology structure and how well it maps to UBERON and through it to other species. We use it when we can (for stages), but we also need embryonic age in …
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Hi:
Today I tried to compare AS events from 3 different developmental stages(progenitors, new_born neurons, Mature_neurons), I realized that I need to figure out what does logFC mean in the output fi…
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**Question**
From your document, it seems that you can only use one factor to do the contrast in differential gene expression analysis.
What if we need to combine two factors?
**What have I tried…
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In GitLab by @fbastian on Sep 23, 2015, 15:49
Currently, to propagate no-expression calls, we have a system to identify valid conditions for propagation: we retrieve annotated conditions, and all con…
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I have collected samples from various developmental stages and need to analyze them together. However, I am concerned about the batch effect that cells from different samples clustering while using MI…
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Hi
Currently the _expressedIn_ property of the Gene type expects an anatomical entity (e.g. Uberon).
Could it be extended to include also developmental stages, and sex and strain conditions fo…
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We already have `kim_dev_...`, but we should add all the different developmental stages now they've been released (and maybe rename them). Ideally we would have one script that packages them all up,
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A new lentil model is proposed that will derive from the current efforts on the [chickpea](https://github.com/APSIMInitiative/ApsimX/issues/158) model. The main difference from chickpea is that the ke…
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The method is described in CoRA Docs (Age estimation - see the information below) but not added on the CoRA platform. It could be really useful to add a minimum/maximum age based on epiphyseal fusion …
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Hey, everyone! I'm Carley. I was born and raised in Vancouver. I completed my undergraduate degree at UBC, majored in Biology. I spent a few years working in wide range of fields, but my interests led…