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Hello,
I’ve been admiring the chromosome collinearity images produced by the ` jcvi.graphics.karyotype` module; they are indeed very beautiful. However, it seems that this module is designed prima…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rhielab/TENET
Confirm the following by editing ea…
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I have briefly used Gradio before and could have an attempt at designing a frontend for the project. However, before starting, I wanted to discuss how much feature parity we could achieve with DeepMin…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Oshlack/Barbie
Confirm the following by editing e…
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Hi, to generate the Circos visualization for fish mitochondrial DNA, you have to manually update the annotation file. Is it possible to use the annotations from the MitoFish annotator?
https://gith…
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Hi,
I notice that the program can return a suboptimal alignment in endsfree mode when match score != 0.
Given a pattern (sequencing read) `GGGGCGCGTCGGGCTCCGGGTGTGGGGGGGGTGTGGGGGGGGGGGGTGGTGTGTGG…
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## 🐛 Bug
It seems that at some point, when choosing to follow the `zyx` "row-major" ordering, we also assumed a left-handed coordinate system. This goes against expectations and often results is mi…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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Hi
Your ideogram visualization looks very neat. I am looking into visualizations for genetic genealogy purposes. For that reason it would be very useful to color segments from multiple persons, fo…
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Hi!
I'm having trouble when excluding **single** columns from DNA alignment. When saving standard phylip or nexus it writes IDs of excluded columns in format 11 22 33. Then upon re-opening of the fi…