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As an optional step, it would be nice if the pipeline can also run Dorado.
Example code can be found here, bc it is not so easy to make Dorado usable on different architectures (local, HPC, ...) d…
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# Issue Report
I am working with data sequenced with a Promethion P2. The library protocol was done with a Twist Mechanical Fragmentation kit, using stubby adapters and IDT UDI 96 well plates. I have…
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# Issue Report
## Please describe the issue:
Hi, I was testing different configurations to demux non-ONT barcodes in order to find optimal scoring and window sizes settings, and found inconsiste…
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Hi, I am trying to reproduce the result of apa analysis of nanopore to use for further research.
I am following the pipeline of Simpson_Barton_FPA_NLRs github code.
Now, I have bam file and trying…
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Dear pychopper developers,
I have been comparing the difference in trimming between `dorado trim` tool and pychopper with `-m edlib` option activated and only using the full-length/default file out…
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Hello, when using 'dorado basecaller' command to do the alignment with '--reference' parameters. Can I set up multiple threads to speed up the alignment process？
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Hi!
I've been using dorado to correct my simplex reads but it's my first time to encounter a "not finishing" progress. It's stuck at 100% for 4 hours now.
-Dorado version: 0.8.0
-Command:
`
…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2M…
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Hello, for first time I am having some problems since I started to use rampart after generate my fastq with dorado. I have this kind of problems:
(artic-rampart) minion@minion-H470M-DS3H:~/Documents/…
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### OS
Windows 10
### Programming Language
c++
### VPK Version
None
### Library Version
https://github.com/velopack/velopack/commit/04dd272be2c95aa925f9a3fc83a5456fc4752e0f
###…