artic-network rampart issues

artic-network / rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

GNU General Public License v3.0

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rampart with dorado's .fastq

#117 doloacu opened 2 months ago
1
Update environment.yml to pin "nodejs"

#116 Desperate-Dan closed 3 months ago
0
Be able to provide a barcode to sample name mapping from a CSV/TSV file

#115 rambaut opened 1 year ago
0
File watching doesn't work in Windows Subsystem for Linux

#114 rambaut opened 1 year ago
0
Multiples genomes

#113 SergioBuenestadoSerrano opened 1 year ago
1
Bump minimist, mkdirp, loader-fs-cache and handlebars

#112 dependabot[bot] opened 1 year ago
0
Bump json5 from 1.0.1 to 1.0.2

#111 dependabot[bot] opened 1 year ago
0
Bump express from 4.17.1 to 4.17.3

#110 dependabot[bot] opened 1 year ago
0
Bump qs from 6.5.2 to 6.5.3

#109 dependabot[bot] opened 1 year ago
0
Bump decode-uri-component from 0.2.0 to 0.2.2

#108 dependabot[bot] opened 1 year ago
0
Bump engine.io and socket.io

#107 dependabot[bot] opened 2 years ago
0
Bump loader-utils and react-scripts

#106 dependabot[bot] opened 2 years ago
0
Bump socket.io-parser from 3.3.0 to 3.3.3

#105 dependabot[bot] opened 2 years ago
0
Bump socket.io-parser from 3.3.0 to 3.3.2

#104 dependabot[bot] closed 2 years ago
1
Bump @hapi/hoek from 8.5.0 to 8.5.1

#103 dependabot[bot] opened 2 years ago
0
Bump d3-color from 1.4.0 to 3.1.0

#102 dependabot[bot] opened 2 years ago
0
Bump terser from 4.4.2 to 4.8.1

#101 dependabot[bot] opened 2 years ago
0
Bump eventsource from 1.0.7 to 1.1.1

#100 dependabot[bot] opened 2 years ago
0
Bump async from 2.6.3 to 2.6.4

#99 dependabot[bot] opened 2 years ago
0
Bump url-parse from 1.4.7 to 1.5.10

#98 dependabot[bot] opened 2 years ago
0
Bump url-parse from 1.4.7 to 1.5.7

#97 dependabot[bot] closed 2 years ago
1
Bump follow-redirects from 1.9.0 to 1.14.8

#96 dependabot[bot] opened 2 years ago
0
Bump ajv from 6.10.2 to 6.12.6

#95 dependabot[bot] opened 2 years ago
0
Bump handlebars from 4.5.3 to 4.7.7

#94 dependabot[bot] opened 2 years ago
0
Bump follow-redirects from 1.9.0 to 1.14.7

#93 dependabot[bot] closed 2 years ago
1
Latest release: v1.0.6 or v1.2.0?

#92 sassy-crick closed 1 year ago
1
using the fastq.gz files demultiplexed

#91 josephhughes closed 1 year ago
1
System limit for number of file watchers reached when using millions of reads

#90 jagos01 opened 3 years ago
1
under what coverage for a position there would be "N" in the consensus sequence?

#89 dinavb closed 1 year ago
0
Add custom_barcodes to the annotationOptions config choices

#88 JudoWill opened 3 years ago
1
how to translate from locations on the genomes in the VCF to the mutation in aa?

#87 dinavb opened 3 years ago
0
showing different samples

#86 dinavb closed 3 years ago
2
Bump socket.io from 2.2.0 to 2.4.0

#85 dependabot[bot] closed 2 years ago
1
Feature request: add extra charts with read information using seqkit

#84 rmcolq opened 3 years ago
0
Inclusion Native Barcoding 96 Expansion barcodes (ONT)

#83 menickname closed 1 year ago
6
Seqkit backend and other improvements

#82 bsipos closed 3 years ago
2
ncov2019 protocol version 3

#81 MaestSi closed 4 years ago
1
Call snakemake with --cores argument

#80 jameshadfield closed 4 years ago
0
improve display when no fastq data is available for a sample

#79 jameshadfield closed 4 years ago
0
Made the number of threads used during mapping and demultiplexing configurable.

#78 bsipos closed 4 years ago
0
FATAL ERROR: Ineffective mark-compacts near heap limit Allocation failed - JavaScript heap out of memory

#77 Psy-Fer closed 4 years ago
6
Scale 'unassigned' barcode bar to be per sample

#76 rambaut opened 4 years ago
1
Include a coverage heat-map above amplicon graphic for each sample

#75 rambaut opened 4 years ago
0
Show coverage plot in summary panel

#74 rambaut opened 4 years ago
0
Fastqs with the same name in different folders are excluded from analysis

#73 MaestSi closed 4 years ago
9
Add --cores argument to snakemake calls

#72 jameshadfield closed 4 years ago
5
Improve read lengths histogram x-axis domain

#71 jameshadfield opened 4 years ago
0
Export Reads fails when there are unprocessed FASTQs on disk

#70 jameshadfield opened 4 years ago
0
error in running the examples EBOV dataset

#69 micheledellab closed 4 years ago
11
Allow fastqs to be gzipped

#68 jameshadfield closed 4 years ago
0