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I'm wondering about the following thing:
- on line 275, the DWI image is cropped (the output is `"${file_dwi}"_crop.nii.gz`)
- but then, on line 277, motion correction is done on the original, non-…
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Hi @Lestropie
**Description**:
I encountered an error during the participant-level processing step using the MRtrix3 Connectome pipeline. The error suggests that the pipeline is unable to import t…
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Hi,
I have a dataset from Philips that includes a DWI b50 isotropic image, that by dcm2niix is only partially recognized as a DWI. "BidsGuess" is correctly catching its a DWI image, however because…
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### Describe your problem in detail.
Prompted by work happening in #1831, but is actually a consequence of #1725.
Having acquired data with all scanner-generated derivatives enabled, I can confirm…
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### What happened?
I'm trying MRIQC on 50 subjects on the HPC using apptainer. Most subjects run fine for all three modalities at once: `T1w, bold, dwi`. However, some crashed.
To investigate, I …
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Moved this from #1216
We collect ex-vivo diffusion data on our mice and we have some older datasets from when I first started work in rodent imaging. It's 3D diffusion acquisitions and one of the c…
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**Describe the Issue**
PyDesigner-DWI is no longer available on pypi. This means pip install no longer works.
**Issue Reproduction**
Running "pip install PyDesigner-DWI" results in the follow…
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Hello,
I am working with Clinica 0.7.7, Python 3.10. My OS is Red Hat Enterprise Linux 8.5 (Ootpa). When running the following dwi_preprocessing pipeline, the program crashes with the attached erro…
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Hi there,
We are running fsl_topup_epi_eddy on our DWI data (108 directions, b-values from 5 - 3000 mm/s^2) with the following code:
fsl_topup_epi_eddy --imain $dwi_PA,$dwi_AP \
--mask $dwi_PA_…
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Hi there, I get an error when trying to run UKFTractography in the pnlpipe docker container (please advise, thank you in advance!):
(pnlpipe3) [root@156c1c951699 dwi]# UKFTractography --dwiFile su…