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We want to be able to include some standard basic statistics on the gene/protein annotation set for an assembly in a genome note. This sub workflow should accept an annotation set and calculate some s…
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The following axioms should be created/updated from OMIM:
'has material basis in germline mutation in' some GENE
- gene-to-disease information from OMIM, based on rules discussed HERE (need to be…
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We can require this as a preprocessing step, or add an arg in `create_gene_binary()`. We will think on it more and maybe ask Caroline and Alli for preference.
Maybe we want to do fuzzy matching to…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky Linux release 8.9
### Workflow Version
v1.2.1
### Workflow Execution
Command line (Cluster)
### Other workflow exe…
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Hi,
This toolkit is excellent! Forgive me, I'm a newbie.
I want to use it in my own single cell dataset (scanpy dataset). but which one in nootbok[https://github.com/azizilab/DIISCO_public/tree…
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### Ask away!
Hi, I'm trying to specify the minimap2 parameter '--junc_bed' with a bed file of splice annotations to ensure the correct splice sites are mapped around my gene of interest, which is so…
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We need to create some mondo subset files for use in KGs along the following lines:
- Rare disease subset
- Rare disease subset with leaf nodes representing variants in same gene rolled up to pare…
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Hi there,
Thank you again for creating this wonderful tool! I had a question regarding your fusion gene analysis in your recent biorxiv paper: https://www.biorxiv.org/content/10.1101/2021.04.21.440…
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The traceback:
```
Error in py_call_impl(callable, call_args$unnamed, call_args$named) :
FileNotFoundError: [Errno 2] No such file or directory: '/home/rstudio/workspace//data/SspArc0008_10x_c…
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In discussion with @leemdi this morning, we went over all of the MGI products that will no longer be valid once the switchover is made to the GOC. It doesn't make sense for @leemdi to continue to gene…