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Hello,
I'm looking for the C5 Ontology gene sets https://www.gsea-msigdb.org/gsea/msigdb/human/genesets.jsp?collection=C5 but cannot find them in your Genesets_data
![image](https://github.com/user…
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Hi!
First off, thank you for this analysis tool!
I am analyzing some Perturb-Seq data and have followed the vignette. I ran Mixscale_Scatterplot and interestingly the perturbation score seems p…
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Some users would like to visualize the expression of many genes at a time that represent a biological process, commonly known as a gene signature. This ticket is to support visualization of (potential…
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https://xenabrowser.net/datapages/?host=https%3A%2F%2Fucscpublic.xenahubs.net&dataset=ccle%2FCCLE_DepMap_18Q2_RNAseq_reads_20180502.log2
Let haitang.yang88@gmail.com and Don know when fixed.
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I keep throwing the same error every time I try to plot the drivers vs signatures plot:
> matprob sig.cols for(i in 1:nrow(matprob)){
+ g
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Hi,
Thank you for making this amazing package! It has been a life saver for me.
However, I ran into a problem when trying to calculate gsva results using the method "UCell".
` #annotation
hsk…
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I tried rds
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/EMSL-Computing/TMSig
Confirm the following by edi…
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Moved from: https://github.com/greenelab/adage-frontend/issues/142
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From Georgia:
Hi @dongbohu -
For your first point - gene name, PAO1 number and PA14 number would all be great, but if it h…
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when I try the code like this:
```
${pyscenic_path}/pyscenic aucell \
${inputs_loom} \
${output_path}/data.filt.reg.csv \
--output ${output_path}/${project}_data.filt.out_SCENIC.loom …