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Please check all lessons. I've done it for most of perform-genome-scan-lmm.Rmd, but not all.
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### Description of the bug
When I use my custom reference, error always show: This path is not available within annotation-cache. Please check https://annotation-cache.github.io/ to create a request …
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Hello,
Thank you for developing the tool.
If I am expecting a repeat may or may not start with the `--regions regions.bed`, but will extend beyond the genomic regions that are defined within `--…
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I am ruining MIPGEN with very basic options, but in my output ....picked_mips.txt file does not contain any number in Ext_Probe_copy & lig_probe_copy getting only 0.
(../MIPGEN/mipgen -regions_to_s…
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Hello,
I am following [this](https://morris-lab.github.io/CellOracle.documentation/notebooks/02_motif_scan/02_atac_peaks_to_TFinfo_with_celloracle_20200801.html) tutorial to obtain a base GRN, with…
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Hi,
I am trying to add genome of interest into my kraken database. The genome is not available on NCBI and I have downloaded it from somewhere else. The tax IDs for the genome are present in both nod…
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Hello,
I'm coming back to pLM-BLAST after leaving it for a while. I really like the approach and wanted to see what improvements had been been made since October 2023. I'm still hoping to apply it…
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Is there a straightforward way to get strand information for the bedGraph or coverage files produced by Bismark, without generating a genome-wide cytosine report? I would like to avoid that for runtim…
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When I run this command : tfi.scan(fpr=0.02,motifs=None, verbose=True)
Error reported as follows : The Kernel crashed while executing code in the current cell or a previous cell.
So I do it in b…