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Hello, I have run gff3_QC and gff3_fix on my two gff files but I am getting the following error while using the gff3_merge command
```
gff3_merge -g1 Qalba_4.3.1.HapA.genes_corrected.gff3 -g2 QalbaA…
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Hello,
I want to run core gene analysis with Spine locally and also want to include gff file, I use -f for genome_files.txt which containing paths to fasta file and their coresponding gff files. It i…
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## Expected Behavior
No error.
## Current Behavior
```
Not enough GFF files are provided. Some results might be omitted
tmpFolder/15806226240676100088/createsetdb.sh: line 130: 9468 Segmentati…
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Hi,
Is there a pipeline to obtain required input annotation files for any other genomes? For example, I have rice genome sequences in fasta and annotations in gff format, how to prepare the requir…
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I have already run Pyrodigal on ~50k genomes and would like to run GECCO on these genomes without rerunning Pyrodigal in the backend. Is there similar usage to `antiSMASH` where precompute gene model…
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Thankyou for building the new tool to complement Orthofinder.
The features are currently required in NCBI feature format. Is it possible to implement a feature to use a local GFF file instead as an i…
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I am a PhD student doing a collaborative project between Trinity College Dublin and UCLondon and am using MCScanX. I am just getting to know the tool and have been trying to use the test data availabl…
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Hello developers!
Thank you for such an great tool!
I wonder if there is an option or way to keep the pyrodigal cds predictions in a gff format or convert the tsv coordinates to gff
Thank you…
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Not sure if it is a software problem or if my gff format does not meet the requirements of the software. It is recommended that authors provide an example-gff file that can be run.
```
Scanning Sequ…
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Hello,
I have trouble in using prophET. I validated my GFF file and i still receive this error "The following line does not have 9 columns separated by , a GFF format requirement.
Check if the col…