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**Provide the solver name**
Laplace Gillespie Solver
**Link a paper or provide a reference for the described solver**
https://arxiv.org/abs/1601.01490
**Describe a usecase of the solver**
The…
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Hello!
I am trying to run a simulation where I am adding a high or low track at random, and I expect that for the same amount of time (such as t = 40), as my rate of high tracks increases, the numb…
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Try running with 1 hr time steps & gillespie's algorithm
m6thu updated
6 years ago
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Hi all,
I was just wondering if there were any plans to implement SSAs for dealing with stiff systems, like implicit tau-leaping [1, 2] or the slow-scale SSA [3]? I saw that @ChrisRackauckas mentio…
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kaizu updated
4 years ago
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i imagine folks who work with compartmental models may occasionally want to simulate them stochastically. for example, me :)
david suggested using `adaptivetau` as opposed to implementing the Gille…
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Dear Samuel,
Togheter with other students I'm currently trying to reproduce and extend part of your study. We're however currently unable to solve a series of issues related to the Spreading_CR pac…
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In looking at the ODEs used ultimately for the equilibrium and two component system processes, I noticed that these ODEs are stiff and effectively impossible to solve without a specialized solver. Th…
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```
from roadrunner import RoadRunner
sbml_file = "AModel.sbml"
r = RoadRunner(sbml_file)
integrators = ('cvode', 'gillespie', 'rk4', 'rk45', 'euler')
data = {}
for integrator in integrators…
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Might be useful to have an issue to add useful papers as we come across them.
The Wolf Am Nat one looks pretty useful.
Might also be some useful stuff in this meta-analysis: http://beheco.oxford…