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- [x] Add links as in foldout section of `pass / FAIL (R)` column
Amici, gillespy2, and vcell seem to pass while they do not really pass.
For **remote** runs:
- [x] in logs find "simulation fai…
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Opening here a thread to keep track of progress for benchmarking with GillesPy2 and Gillepy2julia. (Have some health issues so will be little slow for now)
Bdw, has anybody tried using julia wrapp…
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Hi,
I was running a simulation with the `SSACSolver`, and noticed that sometimes it gets stuck while reading from stdin in this line:
https://github.com/StochSS/GillesPy2/blob/de40702372aefade7634…
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Related to issue [#512](https://github.com/StochSS/GillesPy2/issues/512) in gillespy2
Wrede updated
3 years ago
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how to add a nullspecies in a reaction as a reactant or product ?
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Currently `test_biosimulators` runs tests on the following biosimulators: biosimulators_tellurium, biosimulators_cobrapy, biosimulators_cbmpy, biosimulators_bionetgen, biosimulators_gillespy2, biosimu…
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I have a simple model I want to simulate. I try the various solvers `lsoda` `zvode` and `vode`. For some reason, the `lsod` solver is waaay faster than the other two. Like, thing are fine because I ca…
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According to GPL:
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
{project} Copyright (C) {year} {fullname}
…
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Every biomodels that uses steady state uses the KISAO term 282 ('KINSOL'), and the checker returns this error:
NotImplementedError: Algorithm substitution for "KINSOL" (http://www.biomodels.net/ki…