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Flagged [internally](https://support.nextstrain.org/agent/nextstrain/nextstrain/tickets/details/668036000007764001) by @rneher that the acknowledgements download does not include the GISAID isolate ID…
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From branch 2 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/2067
There seems to be a very recent new LF.7+S:A475V branch growing in Qatar.
@FedeGueli analyse:
> Qatar w…
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## Context
Our automated workflows use short lived AWS credentials for sessions which are limited by the [max_session_duration](https://github.com/nextstrain/infra/blob/814a7e4cd635b40c12fb0c4e83b168…
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- Revisar esquema Gisaid (Maria Lara)
- relecov-tools map para gisaid
- relecov-tools upload-to-gisaid usando multisub https://github.com/maximilianh/multiSub
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Hi, @maximilianh
It's a useful tool for submitting viral sequences in bulk.
I am wondering to know if it was possible to provide submission of pathogenic sequences other than COVID-19 (e.g influe…
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Write accessory scripts to upload clean reads as biosamples and final assembly to nexstrain/GISAID
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## Context
In a pathogen repo, there will technically be 3 separate workflows that can be run: ingest, phylogenetic, and nextclade.
It's unclear how we want to set up the standardized GitHub Actio…
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Would be great if you could upload open sequences from the proposal directly to the Github issue so that it can be easily checked in Nextclade & co (you may have to make the ending `fasta.txt` so Gith…
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Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…