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jmcbroome
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auto-pango-designation
Repository for automated flagging of new lineages for pango designation.
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strip_annotations.py apply_annotations(nannd) function not present in btw
#195
nfellaby
opened
1 year ago
0
General Feedback [2023-02-19]
#194
corneliusroemer
opened
1 year ago
9
New Lineages Update: 20 new lineages active through 2023-02-15
#193
jmcbroome
opened
1 year ago
33
New Lineages Update: 6 new lineages active through 2023-02-15
#192
jmcbroome
closed
1 year ago
0
New Lineages Update: 20 new lineages active through 2023-02-09
#191
jmcbroome
opened
1 year ago
3
New Lineages Update: 20 new lineages active through 2022-12-21
#190
jmcbroome
closed
1 year ago
2
New Lineages Update: GatewayCheck
#189
jmcbroome
closed
1 year ago
0
New Lineages Update: 7 new lineages active through 2022-12-01
#188
jmcbroome
closed
1 year ago
4
New Lineages Update: 7 new lineages active through 2022-12-01
#187
jmcbroome
closed
1 year ago
0
New Lineages Update: 7 new lineages active through 2022-12-01
#186
jmcbroome
closed
1 year ago
0
New Lineages Update: 7 new lineages active through 2022-12-01
#185
jmcbroome
closed
1 year ago
0
New Lineages Update: 13 new lineages active through 2022-12-01
#184
jmcbroome
closed
1 year ago
0
New Lineages Update: 15 new lineages active through 2022-12-01
#183
jmcbroome
closed
1 year ago
0
New Lineages Update: 15 new lineages active through 2022-12-01
#182
jmcbroome
closed
1 year ago
2
New Lineages Update: 15_gisaidAndPublic_2022-12-01
#181
jmcbroome
closed
1 year ago
0
New Lineages Update: 15_gisaidAndPublic.2022-12-01.ann.proposed.pb
#180
jmcbroome
closed
1 year ago
0
BUG: Lineage proposed that has 0 matches on covSpectrum
#179
corneliusroemer
opened
2 years ago
3
ENH: Offer alternative covspectrum query that uses mutations only
#178
corneliusroemer
opened
2 years ago
4
ENH: Include fasta of the open (non-GISAID) sequences in your proposal for direct inspection
#177
corneliusroemer
opened
2 years ago
5
ENH: Add ACE2 score as calculated by Bloom calculator to issue, like you do with immune scape score
#176
corneliusroemer
closed
1 year ago
0
ENH: Add AA mutations to issue title
#175
corneliusroemer
closed
1 year ago
3
New Lineages Update: 122_gisaidAndPublic.2022-10-11.proposed.pb
#174
jmcbroome
closed
1 year ago
0
New Lineages Update: 0_gisaidAndPublic.2022-10-11.proposed.pb
#173
jmcbroome
closed
2 years ago
0
New Lineages Update: latest_lineages
#172
jmcbroome
closed
2 years ago
0
1868 BA.4.1.1 samples in USA
#171
jmcbroome
closed
1 year ago
1
752 BA.5.1.22 samples in France
#170
jmcbroome
closed
1 year ago
1
427 BE.1.1.2 samples in Germany
#169
jmcbroome
closed
1 year ago
2
207 BA.5.2.9 samples in USA
#168
jmcbroome
closed
1 year ago
0
318 BA.4.1 samples in USA with S:G3V,S:N658S,S:R346T
#167
jmcbroome
closed
1 year ago
1
784 BA.5.1.23 samples in USA
#166
jmcbroome
closed
1 year ago
0
403 BF.5 samples in Japan
#165
jmcbroome
closed
1 year ago
0
709 BA.5.1.10 samples in USA
#164
jmcbroome
closed
1 year ago
0
1024 BF.1 samples in Japan
#163
jmcbroome
closed
1 year ago
0
1279 BA.5.3.1 samples in Germany
#162
jmcbroome
closed
1 year ago
0
530 BF.7 samples in Germany
#161
jmcbroome
closed
1 year ago
0
977 BA.4.6 samples in USA
#160
jmcbroome
closed
1 year ago
0
761 BE.2 samples in USA
#159
jmcbroome
closed
1 year ago
0
1450 BF.28 samples in England
#158
jmcbroome
closed
1 year ago
0
2051 BA.5.2_no28330 samples in England
#157
jmcbroome
closed
1 year ago
0
3608 BA.5.2.1 samples in Japan
#156
jmcbroome
closed
1 year ago
0
2701 BA.5.9 samples in Germany
#155
jmcbroome
closed
1 year ago
0
3552 BA.5.1 samples in Germany
#154
jmcbroome
closed
1 year ago
0
4289 BA.5.2 samples in Japan
#153
jmcbroome
closed
1 year ago
0
9616 BE.1 samples in England
#152
jmcbroome
closed
1 year ago
0
1387 BF.28 samples in England
#151
jmcbroome
closed
2 years ago
0
1853 BA.4.6 samples in USA
#150
jmcbroome
closed
2 years ago
0
4957 BA.5.6 samples in USA
#149
jmcbroome
closed
2 years ago
0
3422 BA.5.5 samples in USA
#148
jmcbroome
closed
2 years ago
0
3977 BA.4.1 samples in Chile
#147
jmcbroome
closed
2 years ago
0
1896 BA.5.2_no28330 samples in England
#146
jmcbroome
closed
2 years ago
0
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