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Some incidence in specific tissue tumor terms are under both neoplasia and the tissue morphology branches while others are only under neoplasia. We should review these and make sure they are consisten…
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Dear,
I get an error running the setup_data_structures.py step. Specifically, when running the def build_incidence_table line 87.
This is the incidence dataframe (result line 85)
![image](https…
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Running CohortIncidence via Strategus multiple times on DataBricks produced the following error:
```bash
java.sql.SQLException: [Databricks][DatabricksJDBCDriver](500051) ERROR processing query/st…
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Universal PTV:
Cutoffs are based on all patients. There are 2 groups: 90% below and 90% above.
Female low PTV burden: green
Female high PTV burden: purple
Male low PTV burden: blue
Male high PTV …
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The incidence proportion shown in the hover box just seems to be the year count over the total cohort count. We think it should be (COUNT = cohort count in year) / (total people in DB that year).
…
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This figure shows the cumulative incidence curves for 16 tumors, where diagnosed patients were compared to the total population. Based on the number of PTVs in tumorsuppressor genes, there are two gro…
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Universal PTV with 90% cutoffs:
Cutoffs are based on all patients. There are 2 groups: 90% below and 90% above.
Female low PTV burden: green
Female high PTV burden: purple
Male low PTV burden: bl…
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* We have incidence variables in the baseline data. Since baseline data should only include variables that were measured at baseline, would it make sense to move the incidence variables to the longitu…
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Consider adding a simple table of overall cancer incidence and mortality that includes the "trend" from state cancer profiles data. Alternatively, just include a table with the "trend" for all cancers…
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We did it for standard ai.integrate2d, but not in multi_geometry which is using ("full", "histogram", "cython") by default
So, by default, GI + multi_geometry will fill the missing wedge