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Hello,
I'm analyzing RNA sequencing data of samples from every chromosome, and I'm trying to gauge the expected duration for the Intron Clustering process. In my recent analysis, processing 10 samp…
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Hi,
I found some extremly long introns in spaln results (when mapping protein sequences to genome), some are ~1Mb, is there a way to limit intron length when running splan?
, the estimated genomic redundancy can be highly inflated, wrongly indicating that the quality is bad.
## The solution
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Hi everyone,
I am trying to analyze some transcriptome assembly I created via Trinity. Considering the final nucleotide sequence is called .cds, does transcdecoder exclude introns? Because I am loo…
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Dear @emmanuelparadis,
thank you for maintaining the package pegas.
I'm a vet and doctoral student and I'm currently working with NGS data obtained from parasites. The "problem" is, that the seq…
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Hi there,
I was testing LiftOff and LiftOn to see which one is "best" for genome annotation. I was looking at some RefSeq genomes, lifting the brown-headed cowbird and red-winged blackbird onto the…