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Hello,
When I use METABOLIC/METABOLIC-C.2nd_run.pl, I get the following error message. File "All_gene_collections_mapped.depth.217pc.txt " and "MW-score_result.txt" are empty. Looking forward to you…
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Hello,
Is it possible to construct the metabolic network diagrams at taxonomic levels other than phylum? Such as order, family etc?
Thank you,
Sarha
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### Checklist
- [X] There are [no similar issues or pull requests](https://github.com/opencobra/cobrapy/issues) for this yet.
### Problem
I been trying to work on some metagenome analysis with cobr…
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Proposed roadmap (from @hariszaf in https://github.com/GeomScale/dingo/pull/18):
- implement approach from [cobra toolbox](https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/multiSpe…
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For example, I have the reaction_name "Isocitrate dehydrogenase (NADP+)", aka ICDHyrm_pos significantly differently in my experimental group. Are there any schematic in the compass resources that I ca…
ahdee updated
1 month ago
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> for bug reports and errors please report the output of: ./gapseq test
Hi,
First of all thanks for such a excellent work of gapseq.
When I tried to reconstruct a metabolic network from a genome of…
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Hello,
I am encountering some issues while running METABOLIC-C.pl. I used the following command: nohup perl METABOLIC-C.pl -in-gn /home/.../dereplicated_genomes/ -r /home/.../all-merged-1.fastq,/ho…
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Hello! I have some problems running metabolic soft, I can get diagrams of element cycles, but there are no output Metabolic_Sankey_diagram.pdf, Functional_network.pdf,Could you please take a look?
co…
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Tune random networks to have the topology commonly found in regulatory or metabolic networks
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…