-
Thanks for the nice tool! Is it possible for this tool run against the customed microbial genomes?
-
Dear @yinlabniu,
Thank you again for a very important tool to annotate CAZymes and identify CGCs in the microbial genomes of interest.
I am interested in examining how complete are the CGCs in my …
-
Because this pipeline is going to be used by multiple project that have a variety of different host organisms it is needed to create a database that contains all these hosts. In the first place to be …
-
Hi,
Thank you for the fantastic work. However i feel confused about some details:
1. I check the **TableS2**, the sums of each sample are different, like this:
![image](https://github.com/yge15/…
-
I'am very interest in the microtrait R package because the reviewers required me to calculate microbial adaptation traits based on metagenome assembled genomes. Because this package integrated many bi…
-
in theory, as we sequence more and more microbial genomes, charcoal should become better and better (balanced a bit by database size and the potential need to dereplicate through species clusters)
…
-
There is a tool with ID "img" in bio.tools ("Integrated Microbial Genomes (IMG)"). But trying to access this tool through its URL https://bio.tools/img will redirect us to a directory of images https:…
-
Hello! I saw your recent preprint, "Scalable estimation of microbial co-occurrence networks with Variational Autoencoders" and I'm hopeful your method may solve my issues, but I wanted to touch base t…
-
I have difficulty figuring out how is the coverage calculation done for the N, C, and S cycles.
Here is an example
I have 38 MAGs that I input as a community and 6 genomes listed as having the abi…
-
### Description of feature
Add the HOSTILE tool for host decontamination
https://www.biorxiv.org/content/10.1101/2023.07.04.547735v1
https://github.com/bede/hostile