-
Mention in some suitable chapter that also mediation analysis is supported by mia.
Or: exemplify the new mediation functionality in mia with a more detailed example. Avoid duplicating what is alrea…
-
Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
-
Hello, a newbie summer intern here, wanted some advice!!
While I was making some grammatical and technical edits to the differential data analysis(DAA) chapter, I was wondering how it will be like …
-
**Is your feature request related to a problem? Please describe.**
At the moment, Hintikka data is used for basically all analysis in OMA book. However, I see a problem in the [MOFA section](https:/…
-
Hello,
some of the examples in OMA are too complex. The examples should be clear enough without unnecessary complexity because it might a) prevent readers to get interested on the framework, and b)…
-
Hi,
I'm following the ["Workflow for Microbiome Data Analysis"](http://web.stanford.edu/class/bios221/MicrobiomeWorkflowII.html) to analyse some 16S and ITS datasets. I'm unsure about the effects t…
-
-
Hi,
to do further analyses, such as the calculation of diversity indices, detailed analysis of the taxonomy and visualisation of multiple samples, which analysis tools to you recommend ? Are there …
-
When one searches for cross-correlation, they'll see that it's mostly related to time series correlations. That can become a font of confusion for beginners.
Might "cross-association" reflect bette…
-
Hi,
I am trying to run SPIEC-EASI with a phyloseq object containing the metagenomic info of prediabetic individuals. I have followed this tutorial: http://psbweb05.psb.ugent.be/conet/microbialnetwork…